Gene Gene information from NCBI Gene database.
Entrez ID 64699
Gene name Transmembrane serine protease 3
Gene symbol TMPRSS3
Synonyms (NCBI Gene)
DFNB10DFNB8ECHOS1TADG12
Chromosome 21
Chromosome location 21q22.3
Summary This gene encodes a protein that belongs to the serine protease family. The encoded protein contains a serine protease domain, a transmembrane domain, an LDL receptor-like domain, and a scavenger receptor cysteine-rich domain. Serine proteases are known t
SNPs SNP information provided by dbSNP.
25
SNP ID Visualize variation Clinical significance Consequence
rs28939084 G>A Pathogenic Genic downstream transcript variant, coding sequence variant, missense variant
rs56264519 C>T Pathogenic, likely-pathogenic Genic downstream transcript variant, coding sequence variant, missense variant
rs111033292 G>A Benign-likely-benign, conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, coding sequence variant, synonymous variant
rs137852999 C>G Pathogenic Missense variant, coding sequence variant
rs137853000 C>A,T Pathogenic, likely-pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
153
miRTarBase ID miRNA Experiments Reference
MIRT054791 hsa-miR-204-5p Luciferase reporter assayWestern blotqRT-PCR 24924414
MIRT439417 hsa-miR-218-5p HITS-CLIP 23212916
MIRT439417 hsa-miR-218-5p HITS-CLIP 23212916
MIRT1441102 hsa-miR-1304 CLIP-seq
MIRT1441103 hsa-miR-1908 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
19
GO ID Ontology Definition Evidence Reference
GO:0004252 Function Serine-type endopeptidase activity IEA
GO:0004252 Function Serine-type endopeptidase activity NAS 11068177, 11137999
GO:0005783 Component Endoplasmic reticulum HDA 16780588
GO:0005783 Component Endoplasmic reticulum IEA
GO:0005789 Component Endoplasmic reticulum membrane IDA 12393794, 17918732
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605511 11877 ENSG00000160183
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P57727
Protein name Transmembrane protease serine 3 (EC 3.4.21.-) (Serine protease TADG-12) (Tumor-associated differentially-expressed gene 12 protein)
Protein function Probable serine protease that plays a role in hearing. Acts as a permissive factor for cochlear hair cell survival and activation at the onset of hearing and is required for saccular hair cell survival (By similarity). Activates ENaC (in vitro).
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00057 Ldl_recept_a 72 107 Low-density lipoprotein receptor domain class A Repeat
PF15494 SRCR_2 112 211 Scavenger receptor cysteine-rich domain Domain
PF00089 Trypsin 217 444 Trypsin Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in many tissues including fetal cochlea. Isoform T is found at increased levels in some carcinomas.
Sequence
Sequence length 454
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
26
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autosomal recessive nonsyndromic hearing loss 8 Pathogenic; Likely pathogenic rs2146436212, rs145913750, rs2052672053, rs2146452391, rs976363536, rs768140716, rs727504304, rs372526764, rs727503493, rs1374533426, rs748150602, rs1016968797, rs137852999, rs28939084, rs137853000
View all (28 more)
RCV001806228
RCV001806227
RCV001806226
RCV001823263
RCV002283552
View all (39 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Childhood onset hearing loss Likely pathogenic; Pathogenic rs374793617 RCV001328013
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Ear malformation Likely pathogenic; Pathogenic rs28939084 RCV001813955
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hearing impairment Likely pathogenic; Pathogenic rs2146430688, rs727503493, rs137852999, rs139805921, rs397517376, rs374793617, rs147231991, rs181949335 RCV001375378
RCV001375379
RCV001375182
RCV001375183
RCV001375133
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AUTOSOMAL RECESSIVE ISOLATED SENSORINEURAL DEAFNESS TYPE DFNB Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colorectal cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL EAR ANOMALY NOS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Androgen Insensitivity Syndrome Androgen insensitivity syndrome Pubtator 28566687 Associate
★☆☆☆☆
Found in Text Mining only
Auditory neuropathy Auditory Neuropathy BEFREE 12324385
★☆☆☆☆
Found in Text Mining only
Auditory neuropathy spectrum disorder Auditory neuropathy BEFREE 12324385
★☆☆☆☆
Found in Text Mining only
Autoimmune polyendocrinopathy syndrome, type 1 Autoimmune Polyendocrinopathy BEFREE 9325172
★☆☆☆☆
Found in Text Mining only
Autosomal recessive non-syndromic sensorineural deafness type DFNB Non-Syndromic Sensorineural Deafness Orphanet
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 25029565, 26014348, 28260080
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 25029565, 25298020, 26014348, 26191247 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Carcinoma BEFREE 11068177
★☆☆☆☆
Found in Text Mining only
Carcinoma Ovarian Epithelial Epithelial ovarian carcinoma Pubtator 19117353 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma, Ovarian Epithelial Ovarian Epithelial carcinoma BEFREE 15361711, 19117353, 22446619
★☆☆☆☆
Found in Text Mining only