Gene Gene information from NCBI Gene database.
Entrez ID 6445
Gene name Sarcoglycan gamma
Gene symbol SGCG
Synonyms (NCBI Gene)
35DAGA4DAGA4DMDADMDA1LGMD2CLGMDR5MAMSCARMD2gamma-SG
Chromosome 13
Chromosome location 13q12.12
Summary This gene encodes gamma-sarcoglycan, one of several sarcolemmal transmembrane glycoproteins that interact with dystrophin. The dystrophin-glycoprotein complex (DGC) spans the sarcolemma and is comprised of dystrophin, syntrophin, alpha- and beta-dystrogly
SNPs SNP information provided by dbSNP.
25
SNP ID Visualize variation Clinical significance Consequence
rs114160429 A>T Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs140810408 C>A,T Likely-benign, conflicting-interpretations-of-pathogenicity Synonymous variant, coding sequence variant
rs144497243 C>A,T Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, coding sequence variant, synonymous variant
rs149595403 A>G Conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, synonymous variant
rs199905729 G>A,T Conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
117
miRTarBase ID miRNA Experiments Reference
MIRT1342989 hsa-miR-1278 CLIP-seq
MIRT1342990 hsa-miR-2113 CLIP-seq
MIRT1342991 hsa-miR-3179 CLIP-seq
MIRT1342992 hsa-miR-33a CLIP-seq
MIRT1342993 hsa-miR-33b CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
17
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 23414517, 32296183
GO:0005737 Component Cytoplasm IEA
GO:0005789 Component Endoplasmic reticulum membrane TAS
GO:0005856 Component Cytoskeleton IEA
GO:0005886 Component Plasma membrane IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608896 10809 ENSG00000102683
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q13326
Protein name Gamma-sarcoglycan (Gamma-SG) (35 kDa dystrophin-associated glycoprotein) (35DAG)
Protein function Component of the sarcoglycan complex, a subcomplex of the dystrophin-glycoprotein complex which forms a link between the F-actin cytoskeleton and the extracellular matrix.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04790 Sarcoglycan_1 25 279 Sarcoglycan complex subunit protein Family
Tissue specificity TISSUE SPECIFICITY: Expressed in skeletal and heart muscle.
Sequence
Sequence length 291
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Cytoskeleton in muscle cells
Hypertrophic cardiomyopathy
Arrhythmogenic right ventricular cardiomyopathy
Dilated cardiomyopathy
Viral myocarditis
 
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
31
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the musculature Pathogenic rs1881219252 RCV001814266
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal recessive limb-girdle muscular dystrophy Pathogenic; Likely pathogenic rs762777463, rs104894423, rs786204786, rs547818652, rs200502077, rs886042757, rs781760379, rs200206447, rs1883152345 RCV004998070
RCV004766977
RCV004998364
RCV002265721
RCV001553764
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Autosomal recessive limb-girdle muscular dystrophy type 2C Likely pathogenic; Pathogenic rs886042757, rs79500874, rs1881865054, rs2137528297, rs2137528349, rs2137501447, rs768134426, rs2137501584, rs2137528312, rs1484553312, rs2137644772, rs1180551378, rs2137501542, rs1196026821, rs2137528211
View all (67 more)
RCV001379346
RCV001387160
RCV001390777
RCV001384531
RCV001386562
View all (86 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
SGCG-related congenital myopathy Pathogenic rs786204786 RCV004586589
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DIABETES MELLITUS, NON-INSULIN-DEPENDENT Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Alzheimer Disease Alzheimer disease Pubtator 34440738 Stimulate
★☆☆☆☆
Found in Text Mining only
Amyloidosis Amyloidosis BEFREE 29468564
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis BEFREE 28917260, 30741580
★☆☆☆☆
Found in Text Mining only
Atrial Fibrillation Atrial fibrillation Pubtator 30061737 Associate
★☆☆☆☆
Found in Text Mining only
Becker Muscular Dystrophy Becker Muscular Dystrophy BEFREE 16183658, 23035061, 8891069
★☆☆☆☆
Found in Text Mining only
BETHLEM MYOPATHY 1 Bethlem Myopathy BEFREE 23035061
★☆☆☆☆
Found in Text Mining only
Bipolar Disorder Bipolar Disorder BEFREE 31812551
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 12793902, 14999780, 24706379
★☆☆☆☆
Found in Text Mining only
Cardiomegaly Cardiomegaly Pubtator 37221368 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy Pubtator 10662809 Associate
★☆☆☆☆
Found in Text Mining only