Gene Gene information from NCBI Gene database.
Entrez ID 6444
Gene name Sarcoglycan delta
Gene symbol SGCD
Synonyms (NCBI Gene)
35DAGCMD1LDAGDLGMDR6SG-deltaSGCDPSGD
Chromosome 5
Chromosome location 5q33.2-q33.3
Summary The protein encoded by this gene is one of the four known components of the sarcoglycan complex, which is a subcomplex of the dystrophin-glycoprotein complex (DGC). DGC forms a link between the F-actin cytoskeleton and the extracellular matrix. This prote
SNPs SNP information provided by dbSNP.
32
SNP ID Visualize variation Clinical significance Consequence
rs74846539 G>A Likely-benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs121909295 C>G,T Pathogenic Stop gained, coding sequence variant, missense variant
rs121909296 G>A,C,T Pathogenic, uncertain-significance Stop gained, coding sequence variant, missense variant
rs121909297 G>A Pathogenic Missense variant, coding sequence variant, genic downstream transcript variant
rs121909298 T>G Pathogenic, uncertain-significance Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
254
miRTarBase ID miRNA Experiments Reference
MIRT018675 hsa-miR-335-5p Microarray 18185580
MIRT712960 hsa-miR-320e HITS-CLIP 19536157
MIRT712959 hsa-miR-409-3p HITS-CLIP 19536157
MIRT712958 hsa-miR-33a-3p HITS-CLIP 19536157
MIRT712956 hsa-miR-6759-3p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
26
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane TAS
GO:0003015 Process Heart process IEA
GO:0005737 Component Cytoplasm IEA
GO:0005789 Component Endoplasmic reticulum membrane TAS
GO:0005856 Component Cytoskeleton IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601411 10807 ENSG00000170624
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q92629
Protein name Delta-sarcoglycan (Delta-SG) (35 kDa dystrophin-associated glycoprotein) (35DAG)
Protein function Component of the sarcoglycan complex, a subcomplex of the dystrophin-glycoprotein complex which forms a link between the F-actin cytoskeleton and the extracellular matrix.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04790 Sarcoglycan_1 23 278 Sarcoglycan complex subunit protein Family
Tissue specificity TISSUE SPECIFICITY: Most strongly expressed in skeletal and cardiac muscle. Also detected in smooth muscle. Weak expression in brain and lung.
Sequence
Sequence length 289
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Cytoskeleton in muscle cells
Hypertrophic cardiomyopathy
Arrhythmogenic right ventricular cardiomyopathy
Dilated cardiomyopathy
Viral myocarditis
 
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
51
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the musculature Likely pathogenic; Pathogenic rs2113389287, rs1412814368 RCV001814423
RCV001814430
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal recessive limb-girdle muscular dystrophy Pathogenic rs758700138, rs121909295 RCV004999675
RCV004998079
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal recessive limb-girdle muscular dystrophy type 2F Likely pathogenic; Pathogenic rs1768838504, rs2113389536, rs778760498, rs2113176852, rs758700138, rs727503422, rs2479930880, rs2481653253, rs1554094927, rs2480248711, rs1369919728, rs121909295, rs121909296, rs121909297, rs267607045
View all (15 more)
RCV001970160
RCV001884710
RCV002007476
RCV002008218
RCV003619756
View all (26 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Dilated cardiomyopathy 1L Likely pathogenic; Pathogenic rs1768838504, rs778760498, rs758700138, rs727503422, rs1369919728, rs121909295, rs121909297, rs2479930998, rs2480247821, rs2480210250, rs1760870278, rs1554137130, rs2481652194, rs1561743757, rs1267810339
View all (4 more)
RCV005032008
RCV002497864
RCV003475307
RCV000673416
RCV004566696
View all (15 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANTI-GAD65 AUTOIMMUNE NEUROLOGICAL SYNDROMES GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST CARCINOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOMYOPATHIES CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Age related macular degeneration Age-related macular degeneration BEFREE 19412524, 30257524, 31689918
★☆☆☆☆
Found in Text Mining only
Autonomic nervous system disorders Autonomic Central Nervous System Diseases BEFREE 24334334
★☆☆☆☆
Found in Text Mining only
Bipolar Disorder Bipolar disorder Pubtator 20132317 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy BEFREE 11257475, 19234115, 19259135, 22304857, 23695275, 26720722, 9097966, 9391120
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathies Cardiomyopathy Pubtator 19259135, 26720722, 36270459 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathies Cardiomyopathy CTD_human_DG 20675662, 25281567
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathies Cardiomyopathy GENOMICS_ENGLAND_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathies, Primary Cardiomyopathy CTD_human_DG 20675662, 25281567
★☆☆☆☆
Found in Text Mining only
Cardiomyopathy Dilated Dilated cardiomyopathy Pubtator 10974018, 19259135, 26720722, 31024045 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathy Hypertrophic Hypertrophic cardiomyopathy Pubtator 17652892, 22524166 Associate
★☆☆☆☆
Found in Text Mining only