Gene Gene information from NCBI Gene database.
Entrez ID 64421
Gene name DNA cross-link repair 1C
Gene symbol DCLRE1C
Synonyms (NCBI Gene)
A-SCIDDCLREC1CRS-SCIDSCIDASNM1C
Chromosome 10
Chromosome location 10p13
Summary This gene encodes a nuclear protein that is involved in V(D)J recombination and DNA repair. The encoded protein has single-strand-specific 5`-3` exonuclease activity; it also exhibits endonuclease activity on 5` and 3` overhangs and hairpins. The protein
SNPs SNP information provided by dbSNP.
22
SNP ID Visualize variation Clinical significance Consequence
rs113870881 T>G Likely-benign, conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, missense variant, non coding transcript variant, coding sequence variant
rs121908156 G>A,T Pathogenic 5 prime UTR variant, synonymous variant, non coding transcript variant, coding sequence variant, stop gained, intron variant
rs121908157 G>A,T Pathogenic Stop gained, synonymous variant, non coding transcript variant, coding sequence variant
rs143782439 T>C Conflicting-interpretations-of-pathogenicity, uncertain-significance Genic downstream transcript variant, synonymous variant, non coding transcript variant, coding sequence variant
rs146832860 C>T Conflicting-interpretations-of-pathogenicity Coding sequence variant, non coding transcript variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
259
miRTarBase ID miRNA Experiments Reference
MIRT042846 hsa-miR-324-3p CLASH 23622248
MIRT508989 hsa-miR-410-3p HITS-CLIP 21572407
MIRT508988 hsa-miR-5011-5p HITS-CLIP 21572407
MIRT515839 hsa-miR-4495 HITS-CLIP 21572407
MIRT508987 hsa-miR-190a-3p HITS-CLIP 21572407
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
34
GO ID Ontology Definition Evidence Reference
GO:0000014 Function Single-stranded DNA endodeoxyribonuclease activity IDA 11955432
GO:0000723 Process Telomere maintenance IBA
GO:0000723 Process Telomere maintenance IEA
GO:0002250 Process Adaptive immune response IEA
GO:0002376 Process Immune system process IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605988 17642 ENSG00000152457
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96SD1
Protein name Protein artemis (EC 3.1.-.-) (DNA cross-link repair 1C protein) (Protein A-SCID) (SNM1 homolog C) (hSNM1C) (SNM1-like protein)
Protein function Nuclease involved in DNA non-homologous end joining (NHEJ); required for double-strand break repair and V(D)J recombination (PubMed:11336668, PubMed:11955432, PubMed:12055248, PubMed:14744996, PubMed:15071507, PubMed:15574326, PubMed:15936993).
PDB 3W1B , 3W1G , 4HTP , 6TT5 , 6WNL , 6WO0 , 7ABS , 7AF1 , 7AFS , 7AFU , 7AGI , 7APV , 7SGL , 7TYR
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07522 DRMBL 239 345 DNA repair metallo-beta-lactamase Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed, with highest levels in the kidney, lung, pancreas and placenta (at the mRNA level). Expression is not increased in thymus or bone marrow, sites of V(D)J recombination. {ECO:0000269|PubMed:11336668}.
Sequence
MSSFEGQMAEYPTISIDRFDRENLRARAYFLSHCHKDHMKGLRAPTLKRRLECSLKVYLY
CSPVTKELLLTSPKYRFWKKRIISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPGSV
MFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSRE
ECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVNKLDMFRNMPE
ILHHLTTDRNTQIHACRHPKAEEYFQWSKLPCGITSRNRIPLHIISIKPSTMWFGERSRK
TNVIVRTGESSYRACFSFHSSYSEIKDFLSYLCPVNAYPNVIPVG
TTMDKVVEILKPLCR
SSQSTEPKYKPLGKLKRARTVHRDSEEEDDYLFDDPLPIPLRHKVPYPETFHPEVFSMTA
VSEKQPEKLRQTPGCCRAECMQSSRFTNFVDCEESNSESEEEVGIPASLQGDLGSVLHLQ
KADGDVPQWEVFFKRNDEITDESLENFPSSTVAGGSQSPKLFSDSDGESTHISSQNSSQS
THITEQGSQGWDSQSDTVLLSSQERNSGDITSLDKADYRPTIKENIPASLMEQNVICPKD
TYSDLKSRDKDVTIVPSTGEPTTLSSETHIPEEKSLLNLSTNADSQSSSDFEVPSTPEAE
LPKREHLQYLYEKLATGESIAVKKRKCSLLDT
Sequence length 692
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Non-homologous end-joining
Primary immunodeficiency
  Nonhomologous End-Joining (NHEJ)
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
33
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Aicardi-Goutieres syndrome 1 Likely pathogenic rs969498121 RCV004542188
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Athabaskan severe combined immunodeficiency Likely pathogenic; Pathogenic rs2130944445, rs1834776385, rs121908157, rs786200884, rs765047440, rs2491634513, rs143144732, rs1839765652 RCV005614754
RCV005614687
RCV000004937
RCV001826416
RCV005616725
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Colon adenocarcinoma Pathogenic rs1162344514 RCV005913647
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
DCLRE1C-related disorder Pathogenic rs2131775994, rs121908156 RCV004758200
RCV005229764
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Colorectal cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenosine deaminase deficiency Adenosine Deaminase Deficiency BEFREE 9132827
★☆☆☆☆
Found in Text Mining only
Agammaglobulinemia Agammaglobulinemia BEFREE 30630113
★☆☆☆☆
Found in Text Mining only
Alopecia Alopecia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder BEFREE 28080106
★☆☆☆☆
Found in Text Mining only
Anxiety Disorders Anxiety Disorder BEFREE 28080106, 29276896
★☆☆☆☆
Found in Text Mining only
Athabaskan severe combined immunodeficiency Severe combined immunodeficiency disease ORPHANET_DG 12055248
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
B-Cell Lymphomas B-Cell Lymphoma BEFREE 8084613, 8396561
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 28548129
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 30947698 Associate
★☆☆☆☆
Found in Text Mining only