Gene Gene information from NCBI Gene database.
Entrez ID 64220
Gene name Signaling receptor and transporter of retinol STRA6
Gene symbol STRA6
Synonyms (NCBI Gene)
MCOPCB8MCOPS9PP14296SLC69A1
Chromosome 15
Chromosome location 15q24.1
Summary The protein encoded by this gene is a membrane protein involved in the metabolism of retinol. The encoded protein acts as a receptor for retinol/retinol binding protein complexes. This protein removes the retinol from the complex and transports it across
SNPs SNP information provided by dbSNP.
24
SNP ID Visualize variation Clinical significance Consequence
rs118203958 G>A Pathogenic Non coding transcript variant, coding sequence variant, missense variant, genic downstream transcript variant
rs118203959 G>A Uncertain-significance, pathogenic Missense variant, coding sequence variant, genic downstream transcript variant
rs118203960 G>A Pathogenic Missense variant, coding sequence variant, genic downstream transcript variant
rs118203961 G>A Pathogenic Intron variant, coding sequence variant, non coding transcript variant, missense variant
rs118203962 T>G Pathogenic Non coding transcript variant, coding sequence variant, missense variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
28
miRTarBase ID miRNA Experiments Reference
MIRT1399179 hsa-miR-1254 CLIP-seq
MIRT1399180 hsa-miR-146b-3p CLIP-seq
MIRT1399181 hsa-miR-3116 CLIP-seq
MIRT1399182 hsa-miR-3173-5p CLIP-seq
MIRT1399183 hsa-miR-4474-3p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
49
GO ID Ontology Definition Evidence Reference
GO:0001568 Process Blood vessel development IMP 17273977
GO:0001822 Process Kidney development IMP 17273977
GO:0003184 Process Pulmonary valve morphogenesis IMP 17273977
GO:0003281 Process Ventricular septum development IMP 17273977
GO:0005515 Function Protein binding IPI 32296183
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
610745 30650 ENSG00000137868
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9BX79
Protein name Receptor for retinol uptake STRA6 (Retinol-binding protein receptor STRA6) (Stimulated by retinoic acid gene 6 protein homolog)
Protein function Functions as a retinol transporter. Accepts all-trans retinol from the extracellular retinol-binding protein RBP4, facilitates retinol transport across the cell membrane, and then transfers retinol to the cytoplasmic retinol-binding protein RBP1
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF14752 RBP_receptor 41 657 Family
Tissue specificity TISSUE SPECIFICITY: Broad expression. In adult eye expressed in sclera, retina, retinal pigment epithelium, and trabecular meshwork but not in choroid and iris. {ECO:0000269|PubMed:17273977}.
Sequence
Sequence length 667
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Retinoid cycle disease events
The canonical retinoid cycle in rods (twilight vision)
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
33
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Anophthalmia-microphthalmia syndrome Pathogenic rs144691445, rs372931895, rs869025269 RCV000207387
RCV000207384
RCV000207353
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Malignant tumor of esophagus Likely pathogenic rs770136705 RCV005868364
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Matthew-Wood syndrome Pathogenic; Likely pathogenic rs2074102664, rs2142004122, rs570214336, rs1595838712, rs118203958, rs606231125, rs118203960, rs118203961, rs606231126, rs606231127, rs1555457919, rs267607096, rs1555457882, rs151341424, rs397514638
View all (10 more)
RCV001332463
RCV001374460
RCV001814902
RCV001884155
RCV000001192
View all (20 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Microphthalmia Likely pathogenic rs750864641 RCV002291349
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANOPHTHALMIA WITH PULMONARY HYPOPLASIA CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANOPHTHALMOS CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARDIOVASCULAR ABNORMALITIES CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CENTRAL NERVOUS SYSTEM CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Alveolar capillary dysplasia Alveolar capillary dysplasia CTD_human_DG 17273977
★☆☆☆☆
Found in Text Mining only
Alveolar capillary dysplasia Alveolar capillary dysplasia Pubtator 17273977 Associate
★☆☆☆☆
Found in Text Mining only
Annular pancreas Annular pancreas HPO_DG
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia UNIPROT_DG 17273977, 17503335, 21368206, 21901792
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia GENOMICS_ENGLAND_DG 17273977, 19839040
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 17503335, 18316031, 19309693, 19839040, 21901792, 22283518, 23591992, 24075189, 26373900, 28398665
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia CTD_human_DG 17503335
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia ORPHANET_DG 17503335
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia CLINVAR_DG 26893459
★☆☆☆☆
Found in Text Mining only
Anophthalmia with pulmonary hypoplasia Anophthalmia Pubtator 17503335, 24075189, 25816144, 32597569 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations