Gene Gene information from NCBI Gene database.
Entrez ID 6392
Gene name Succinate dehydrogenase complex subunit D
Gene symbol SDHD
Synonyms (NCBI Gene)
CBT1CII-4CWS3MC2DN3PGLPGL1PPGL1QPs3SDH4cybS
Chromosome 11
Chromosome location 11q23.1
Summary This gene encodes a member of complex II of the respiratory chain, which is responsible for the oxidation of succinate. The encoded protein is one of two integral membrane proteins anchoring the complex to the matrix side of the mitochondrial inner membra
SNPs SNP information provided by dbSNP.
44
SNP ID Visualize variation Clinical significance Consequence
rs80338844 C>T Pathogenic Missense variant, non coding transcript variant, intron variant, coding sequence variant
rs80338845 G>T Pathogenic Missense variant, non coding transcript variant, intron variant, coding sequence variant
rs80338846 T>C Pathogenic Missense variant, non coding transcript variant, intron variant, coding sequence variant
rs80338847 T>C,G Pathogenic, uncertain-significance Missense variant, non coding transcript variant, coding sequence variant, 3 prime UTR variant
rs104894302 A>G,T Uncertain-significance, pathogenic, likely-pathogenic Missense variant, non coding transcript variant, intron variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
193
miRTarBase ID miRNA Experiments Reference
MIRT054099 hsa-miR-210-3p Luciferase reporter assay 23492775
MIRT054099 hsa-miR-210-3p Luciferase reporter assayMicroarrayqRT-PCRWestern blot 23028679
MIRT054218 hsa-miR-147b Luciferase reporter assayMicroarrayqRT-PCRWestern blot 23028679
MIRT699812 hsa-miR-3138 HITS-CLIP 23313552
MIRT699811 hsa-miR-4800-5p HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
32
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 32296183
GO:0005739 Component Mitochondrion HTP 34800366
GO:0005739 Component Mitochondrion IEA
GO:0005739 Component Mitochondrion TAS
GO:0005740 Component Mitochondrial envelope IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602690 10683 ENSG00000204370
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O14521
Protein name Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial (CybS) (CII-4) (Malate dehydrogenase [quinone] cytochrome b small subunit) (QPs3) (Succinate dehydrogenase complex subunit D) (Succinate-ubiquinone oxidoreductase cytochrome b
Protein function Membrane-anchoring subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (PubMed:10482792, Pu
PDB 8GS8
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05328 CybS 40 158 Family
Sequence
Sequence length 159
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Citrate cycle (TCA cycle)
Oxidative phosphorylation
Metabolic pathways
Carbon metabolism
Thermogenesis
Non-alcoholic fatty liver disease
Alzheimer disease
Parkinson disease
Amyotrophic lateral sclerosis
Huntington disease
Prion disease
Pathways of neurodegeneration - multiple diseases
Chemical carcinogenesis - reactive oxygen species
Diabetic cardiomyopathy
  Citric acid cycle (TCA cycle)
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
41
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Carney-Stratakis syndrome Likely pathogenic; Pathogenic rs1291507545, rs1314133983, rs2135267557, rs2135269697, rs1555187574, rs2135269740, rs2135269378, rs2135269692, rs2135277333, rs587782210, rs2498917264, rs2498895877, rs786203067, rs786202403, rs786203932
View all (66 more)
RCV002242783
RCV002540717
RCV001994720
RCV001874725
RCV001913139
View all (85 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Clear cell carcinoma of kidney Likely pathogenic rs778969755 RCV005926755
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cowden syndrome 3 Likely pathogenic; Pathogenic rs1291507545, rs1314133983, rs2135267557, rs2135269697, rs1555187574, rs2135269740, rs2135269378, rs2135269692, rs2135277333, rs587782210, rs2498917264, rs2498895877, rs786203067, rs786202403, rs786203932
View all (65 more)
RCV002242783
RCV002540717
RCV001994720
RCV001874725
RCV001913139
View all (84 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Fatal infantile mitochondrial cardiomyopathy Pathogenic rs786205436 RCV000171136
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Likely benign; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Adrenocortical carcinoma, hereditary Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CARCINOID SYNDROME Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Carcinoid tumor of intestine Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acromegaly Acromegaly Pubtator 22170724 Associate
★☆☆☆☆
Found in Text Mining only
Actinic keratosis Actinic keratosis BEFREE 17727250
★☆☆☆☆
Found in Text Mining only
Acute Promyelocytic Leukemia Promyelocytic Leukemia BEFREE 9299238
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 22170724
★☆☆☆☆
Found in Text Mining only
Adrenal Cortical Adenoma Adrenocortical adenoma BEFREE 19522821
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Neoplasms Adrenal neoplasia BEFREE 15774781
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 11156372, 11323050, 11397905, 11404820, 12111639, 12381538, 12618761, 12883710, 12928344, 14674304, 14974914, 15064708, 15331017, 15365827, 15774781
View all (86 more)
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma HPO_DG
★☆☆☆☆
Found in Text Mining only
Adrenocortical carcinoma Adrenocortical carcinoma BEFREE 28332880
★☆☆☆☆
Found in Text Mining only
Aniridia Aniridia HPO_DG
★☆☆☆☆
Found in Text Mining only