Gene Gene information from NCBI Gene database.
Entrez ID 6223
Gene name Ribosomal protein S19
Gene symbol RPS19
Synonyms (NCBI Gene)
DBADBA1LOH19CR1S19eS19
Chromosome 19
Chromosome location 19q13.2
Summary Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal pro
SNPs SNP information provided by dbSNP.
9
SNP ID Visualize variation Clinical significance Consequence
rs104894716 G>A Pathogenic Coding sequence variant, stop gained
rs104894717 G>A,T Pathogenic Coding sequence variant, missense variant
rs138938035 G>A,T Pathogenic Initiator codon variant, missense variant
rs143477104 A>G Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs146366047 G>A,C Likely-pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
116
miRTarBase ID miRNA Experiments Reference
MIRT041145 hsa-miR-501-5p CLASH 23622248
MIRT038007 hsa-miR-193b-5p CLASH 23622248
MIRT689240 hsa-miR-508-5p HITS-CLIP 23313552
MIRT689239 hsa-miR-652-3p HITS-CLIP 23313552
MIRT689238 hsa-miR-1273g-3p HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
55
GO ID Ontology Definition Evidence Reference
GO:0000028 Process Ribosomal small subunit assembly IBA
GO:0000028 Process Ribosomal small subunit assembly IMP 17053056
GO:0000462 Process Maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IMP 16990592, 17053056
GO:0002181 Process Cytoplasmic translation IC 23636399
GO:0002181 Process Cytoplasmic translation NAS 25901680
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603474 10402 ENSG00000105372
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P39019
Protein name Small ribosomal subunit protein eS19 (40S ribosomal protein S19)
Protein function Component of the small ribosomal subunit (PubMed:23636399). The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell (PubMed:23636399). Required for pre-rRNA processing and maturation of 40S ribosom
PDB 4UG0 , 4V6X , 5A2Q , 5AJ0 , 5FLX , 5LKS , 5OA3 , 5T2C , 5VYC , 6G18 , 6G4S , 6G4W , 6G51 , 6G53 , 6G5H , 6G5I , 6IP5 , 6IP6 , 6IP8 , 6OLE , 6OLF , 6OLG , 6OLI , 6OLZ , 6OM0 , 6OM7 , 6QZP , 6XA1 , 6Y0G , 6Y2L , 6Y57 , 6YBS , 6Z6L , 6Z6M , 6Z6N , 6ZLW , 6ZM7 , 6ZME , 6ZMI , 6ZMO , 6ZMT , 6ZMW , 6ZN5 , 6ZOJ , 6ZOL , 6ZON , 6ZP4 , 6ZUO , 6ZV6 , 6ZVH , 6ZVJ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01090 Ribosomal_S19e 5 141 Ribosomal protein S19e Family
Tissue specificity TISSUE SPECIFICITY: Higher level expression is seen in the colon carcinoma tissue than normal colon tissue. {ECO:0000269|PubMed:1339304}.
Sequence
Sequence length 145
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Ribosome
Coronavirus disease - COVID-19
  L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Viral mRNA Translation
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
10
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Diamond-Blackfan anemia Pathogenic; Likely pathogenic rs2123256254, rs1555841301, rs2123256342, rs2123283622, rs879993801, rs2513666127, rs869066130, rs138938035, rs2513685131, rs2513667116, rs2513667328, rs2513667411, rs2513667441, rs2513682836, rs1555841307
View all (26 more)
RCV001384824
RCV001383782
RCV002031373
RCV001876903
RCV002010419
View all (41 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Diamond-Blackfan anemia 1 Pathogenic; Likely pathogenic rs2123285949, rs2123284131, rs1555841356, rs869066130, rs2513667116, rs2513667169, rs61762293, rs104894711, rs104894716, rs121908649, rs786200935, rs786200936, rs2513683320, rs2513666238, rs2513685020
View all (7 more)
RCV001784919
RCV004594595
RCV002251029
RCV005227595
RCV005631043
View all (17 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
RPS19-related disorder Likely pathogenic; Pathogenic rs2513667441, rs104894711, rs1555841301 RCV004725271
RCV003415668
RCV003900162
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANEMIA, DIAMOND-BLACKFAN CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Hepatoblastoma Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Landsteiner-Wiener phenotype Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Malignant tumor of urinary bladder Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Aase syndrome Aase-Smith syndrome BEFREE 1746615, 4017281
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Acute Megakaryocytic Leukemias Megakaryocytic Leukemia BEFREE 28566565
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 31168300
★☆☆☆☆
Found in Text Mining only
AICARDI-GOUTIERES SYNDROME Aicardi Goutieres Syndrome BEFREE 26272185, 31063933
★☆☆☆☆
Found in Text Mining only
Amaurosis congenita of Leber, type 1 Leber congenital amaurosis BEFREE 29233793
★☆☆☆☆
Found in Text Mining only
Anemia Anemia BEFREE 20395159, 25216681, 25270909, 28566565, 29044489, 30530752, 9166327
★☆☆☆☆
Found in Text Mining only
Anemia Anemia Pubtator 20395159, 24463277 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Aplastic Aplastic anemia Pubtator 16159874 Associate
★☆☆☆☆
Found in Text Mining only
Anemia, Diamond-Blackfan Anemia BEFREE 10450869, 10541318, 10590074, 10598818, 10698294, 10753603, 11112378, 11176237, 11264183, 11424144, 11563775, 12351378, 12358933, 12430621, 12586610
View all (101 more)
★★☆☆☆
Found in Text Mining + Unknown/Other Associations