Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID	6130
Gene name	Ribosomal protein L7a
Gene symbol	RPL7A
Synonyms (NCBI Gene)	L7ASURF3TRUPeL8
Chromosome	9
Chromosome location	9q34.2
Summary	Cytoplasmic ribosomes, organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribos

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miRTarBase ID	miRNA	Experiments	Reference
MIRT050681	hsa-miR-18a-5p	CLASH	23622248
MIRT050271	hsa-miR-25-3p	CLASH	23622248
MIRT050271	hsa-miR-25-3p	CLASH	23622248
MIRT049060	hsa-miR-92a-3p	CLASH	23622248
MIRT048757	hsa-miR-93-5p	CLASH	23622248
MIRT048490	hsa-miR-100-5p	CLASH	23622248
MIRT048139	hsa-miR-197-3p	CLASH	23622248
MIRT044442	hsa-miR-320a	CLASH	23622248
MIRT043369	hsa-miR-331-3p	CLASH	23622248
MIRT039897	hsa-miR-615-3p	CLASH	23622248
MIRT037584	hsa-miR-744-5p	CLASH	23622248
MIRT036593	hsa-miR-940	CLASH	23622248
MIRT036265	hsa-miR-1229-3p	CLASH	23622248
MIRT035873	hsa-miR-1303	CLASH	23622248
MIRT1317000	hsa-miR-1252	CLIP-seq
MIRT1317001	hsa-miR-3149	CLIP-seq
MIRT1317002	hsa-miR-3177-5p	CLIP-seq
MIRT1317003	hsa-miR-3647-3p	CLIP-seq
MIRT1317004	hsa-miR-3924	CLIP-seq
MIRT1317005	hsa-miR-421	CLIP-seq
MIRT1317006	hsa-miR-4275	CLIP-seq
MIRT1317007	hsa-miR-4282	CLIP-seq
MIRT1317008	hsa-miR-4709-5p	CLIP-seq
MIRT1317009	hsa-miR-4795-3p	CLIP-seq
MIRT1317010	hsa-miR-944	CLIP-seq
MIRT1317002	hsa-miR-3177-5p	CLIP-seq
MIRT1317004	hsa-miR-3924	CLIP-seq
MIRT1317005	hsa-miR-421	CLIP-seq
MIRT1317008	hsa-miR-4709-5p	CLIP-seq
MIRT1317010	hsa-miR-944	CLIP-seq
MIRT1317004	hsa-miR-3924	CLIP-seq
MIRT1317006	hsa-miR-4275	CLIP-seq
MIRT1317010	hsa-miR-944	CLIP-seq

Show/Hide all (37)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000470	Process	Maturation of LSU-rRNA	IBA
GO:0002181	Process	Cytoplasmic translation	IC	23636399
GO:0002181	Process	Cytoplasmic translation	NAS	25901680
GO:0003723	Function	RNA binding	HDA	22658674, 22681889
GO:0003723	Function	RNA binding	IBA
GO:0003723	Function	RNA binding	IEA
GO:0003723	Function	RNA binding	TAS	8360149
GO:0003735	Function	Structural constituent of ribosome	IDA	23636399, 32669547
GO:0003735	Function	Structural constituent of ribosome	IEA
GO:0003735	Function	Structural constituent of ribosome	NAS	12962325
GO:0003735	Function	Structural constituent of ribosome	TAS	8360149
GO:0005515	Function	Protein binding	IPI	15303970, 17507929, 24965446, 30021884, 33961781, 34819669
GO:0005634	Component	Nucleus	HDA	21630459
GO:0005730	Component	Nucleolus	HDA	16791210
GO:0005730	Component	Nucleolus	IDA	25294810
GO:0005737	Component	Cytoplasm	HDA	16791210
GO:0005737	Component	Cytoplasm	IEA
GO:0005737	Component	Cytoplasm	NAS	25901680
GO:0005829	Component	Cytosol	TAS
GO:0005840	Component	Ribosome	IDA	10848616
GO:0005840	Component	Ribosome	IEA
GO:0005925	Component	Focal adhesion	HDA	21423176
GO:0006412	Process	Translation	NAS	12962325
GO:0006412	Process	Translation	TAS	8360149
GO:0016020	Component	Membrane	IDA	10848616
GO:0016020	Component	Membrane	IEA
GO:0022625	Component	Cytosolic large ribosomal subunit	HDA	12962325
GO:0022625	Component	Cytosolic large ribosomal subunit	IBA
GO:0022625	Component	Cytosolic large ribosomal subunit	IDA	32669547
GO:0022625	Component	Cytosolic large ribosomal subunit	IEA
GO:0022625	Component	Cytosolic large ribosomal subunit	IPI	25901680
GO:0022625	Component	Cytosolic large ribosomal subunit	TAS	8360149
GO:0022626	Component	Cytosolic ribosome	IDA	23636399
GO:0042254	Process	Ribosome biogenesis	IEA
GO:0045202	Component	Synapse	IEA
GO:0045296	Function	Cadherin binding	HDA	25468996
GO:1990904	Component	Ribonucleoprotein complex	IEA

MIM	HGNC	e!Ensembl
185640	10364	ENSG00000148303

P62424

Protein name

Large ribosomal subunit protein eL8 (60S ribosomal protein L7a) (PLA-X polypeptide) (Surfeit locus protein 3)

Protein function

Component of the large ribosomal subunit (PubMed:23636399, PubMed:32669547). The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell (PubMed:23636399, PubMed:32669547). {ECO:0000269|PubMed:23636399

PDB

4UG0 , 4V6X , 5AJ0 , 5LKS , 5T2C , 6IP5 , 6IP6 , 6IP8 , 6LQM , 6LSR , 6LSS , 6LU8 , 6OLE , 6OLF , 6OLG , 6OLI , 6OLZ , 6OM0 , 6OM7 , 6QZP , 6W6L , 6XA1 , 6Y0G , 6Y2L , 6Y57 , 6Y6X , 6Z6L , 6Z6M , 6Z6N , 6ZM7 , 6ZME , 6ZMI , 6ZMO , 6ZVK , 7A01 , 7BHP , 7F5S , 7OW7 , 7QVP , 7XNX , 7XNY , 7ZJW , 7ZJX , 8A3D , 8FKP , 8FKQ , 8FKR , 8FKS , 8FKT , 8FKU , 8FKV

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF01248	Ribosomal_L7Ae	122 → 216	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	Domain

Sequence

MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY
IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK
KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP
YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN
VLGPKSVARIAKLEKAKAKELATKLG

Sequence length

266

Interactions

View interactions

	KEGG		Reactome
	Ribosome Coronavirus disease - COVID-19		L13a-mediated translational silencing of Ceruloplasmin expression SRP-dependent cotranslational protein targeting to membrane Viral mRNA Translation Major pathway of rRNA processing in the nucleolus and cytosol Formation of a pool of free 40S subunits GTP hydrolysis and joining of the 60S ribosomal subunit Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Show/Hide Unknown Diseases (2)

Phenotype Name	Clinical Significance	Source	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
CORONARY ARTERY DISEASE	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
GALLSTONES	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Show/Hide Text Mining Associations (10)

Disease Name	Disease (Merged)	Source	PMID	Relationship Type	Evidence Score
Associations from Text Mining Disease associations identified through text mining
Alzheimer Disease	Alzheimer disease	Pubtator	35766008	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Breast Carcinoma	Breast Carcinoma	BEFREE	11759826		★★★★★ ★☆☆☆☆ Found in Text Mining only
Cataract	Cataract	Pubtator	11773032	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only
Colorectal Carcinoma	Colorectal Cancer	BEFREE	10717245		★★★★★ ★☆☆☆☆ Found in Text Mining only
Liver carcinoma	Liver carcinoma	BEFREE	12813464		★★★★★ ★☆☆☆☆ Found in Text Mining only
Malignant neoplasm of breast	Breast Cancer	BEFREE	11759826		★★★★★ ★☆☆☆☆ Found in Text Mining only
Mammary Neoplasms	Mammary Neoplasms	LHGDN	11759826		★★★★★ ★☆☆☆☆ Found in Text Mining only
Neoplasms	Neoplasms	BEFREE	19125294		★★★★★ ★☆☆☆☆ Found in Text Mining only
Osteosarcoma	Osteosarcoma	BEFREE	19125294		★★★★★ ★☆☆☆☆ Found in Text Mining only
Osteosarcoma	Osteosarcoma	Pubtator	19125294	Associate	★★★★★ ★☆☆☆☆ Found in Text Mining only

RPL7A (ribosomal protein L7a)