Gene Gene information from NCBI Gene database.
Entrez ID 6125
Gene name Ribosomal protein L5
Gene symbol RPL5
Synonyms (NCBI Gene)
L5MSTP030PPP1R135uL18
Chromosome 1
Chromosome location 1p22.1
Summary Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of four RNA species and approximately 80 structurally distinct proteins. This gene encodes a member of
miRNA miRNA information provided by mirtarbase database.
59
miRTarBase ID miRNA Experiments Reference
MIRT031631 hsa-miR-16-5p Proteomics 18668040
MIRT048387 hsa-miR-100-5p CLASH 23622248
MIRT047180 hsa-miR-182-5p CLASH 23622248
MIRT045009 hsa-miR-186-5p CLASH 23622248
MIRT045009 hsa-miR-186-5p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
61
GO ID Ontology Definition Evidence Reference
GO:0000027 Process Ribosomal large subunit assembly IBA
GO:0000027 Process Ribosomal large subunit assembly IMP 24120868
GO:0002181 Process Cytoplasmic translation IC 23636399
GO:0002181 Process Cytoplasmic translation NAS 25901680
GO:0003723 Function RNA binding HDA 22658674, 22681889
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603634 10360 ENSG00000122406
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P46777
Protein name Large ribosomal subunit protein uL18 (60S ribosomal protein L5)
Protein function Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-
PDB 4UG0 , 4V6X , 5AJ0 , 5LKS , 5T2C , 6IP5 , 6IP6 , 6IP8 , 6LQM , 6LSR , 6LSS , 6LU8 , 6OLE , 6OLF , 6OLG , 6OLI , 6OLZ , 6OM0 , 6OM7 , 6QZP , 6W6L , 6XA1 , 6Y0G , 6Y2L , 6Y57 , 6Y6X , 6Z6L , 6Z6M , 6Z6N , 6ZM7 , 6ZME , 6ZMI , 6ZMO , 7BHP , 7F5S , 7OW7 , 7QVP , 7XNX , 7XNY , 8A3D , 8BGU , 8FL0 , 8FL2 , 8FL3 , 8FL4 , 8FL6 , 8FL7 , 8FL9 , 8FLA , 8FLB , 8FLC
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF17144 Ribosomal_L5e 14 176 Ribosomal large subunit proteins 60S L5, and 50S L18 Family
PF14204 Ribosomal_L18_c 192 283 Ribosomal L18 C-terminal region Domain
Sequence
Sequence length 297
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Ribosome
Coronavirus disease - COVID-19
  L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Viral mRNA Translation
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
34
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Diamond-Blackfan anemia Likely pathogenic; Pathogenic rs1686989669, rs2100672432, rs2100677043, rs587777117, rs2100685111, rs2100685034, rs2100676852, rs2100688383, rs2524457676, rs138710531, rs1190811369, rs148673599, rs2524462266, rs2524447751, rs2524448276
View all (31 more)
RCV001377843
RCV001380814
RCV001387662
RCV002444558
RCV001971307
View all (42 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Diamond-Blackfan anemia 1 Pathogenic rs1558284033 RCV000761557
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Diamond-Blackfan anemia 6 Pathogenic; Likely pathogenic rs1687123286, rs587777117, rs587777118, rs2100677045, rs2100685111, rs2100688414, rs2100676969, rs1394064043, rs2524458087, rs2524448581, rs2524440268, rs121434405, rs1571026775, rs142156224, rs2524452489
View all (6 more)
RCV001332618
RCV000087038
RCV000087039
RCV001783692
RCV004594615
View all (16 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Glioma susceptibility 1 Likely pathogenic rs1394064043 RCV005930266
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Likely benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA, DIAMOND-BLACKFAN Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
APLASTIC ANEMIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL SEPTAL DEFECTS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Aase Smith syndrome 2 Aase-Smith syndrome GENOMICS_ENGLAND_DG 19061985, 19191325
★☆☆☆☆
Found in Text Mining only
Aase Smith syndrome 2 Aase-Smith syndrome UNIPROT_DG 19061985, 19191325
★☆☆☆☆
Found in Text Mining only
Aase Smith syndrome 2 Aase-Smith syndrome CTD_human_DG
★☆☆☆☆
Found in Text Mining only
Aase Smith syndrome 2 Aase-Smith syndrome CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Acute leukemia Leukemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 39252332 Associate
★☆☆☆☆
Found in Text Mining only
Anemia, Diamond-Blackfan Anemia BEFREE 19061985, 19191325, 19773262, 20358230, 21435509, 22510774, 27258031, 28376382, 29476317, 30933022
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Anemia, Diamond-Blackfan Anemia LHGDN 19061985
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Anemia, Diamond-Blackfan Anemia CLINVAR_DG 19061985, 19773262, 23718193
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Anemia, Diamond-Blackfan Anemia GENOMICS_ENGLAND_DG 19061985, 19191325, 28297620
★★☆☆☆
Found in Text Mining + Unknown/Other Associations