Gene Gene information from NCBI Gene database.
Entrez ID 59341
Gene name Transient receptor potential cation channel subfamily V member 4
Gene symbol TRPV4
Synonyms (NCBI Gene)
BCYM3CMT2CHMSN2COTRPC4SMALSPSMASSQTL1TRP12VRL2VROAC
Chromosome 12
Chromosome location 12q24.11
Summary This gene encodes a member of the OSM9-like transient receptor potential channel (OTRPC) subfamily in the transient receptor potential (TRP) superfamily of ion channels. The encoded protein is a Ca2+-permeable, nonselective cation channel that is thought
SNPs SNP information provided by dbSNP.
64
SNP ID Visualize variation Clinical significance Consequence
rs77975504 C>T Pathogenic Coding sequence variant, missense variant
rs116571438 G>A,T Pathogenic Downstream transcript variant, synonymous variant, genic downstream transcript variant, coding sequence variant, missense variant
rs121912632 C>T Pathogenic Coding sequence variant, missense variant
rs121912633 C>A,T Pathogenic Coding sequence variant, missense variant
rs121912634 T>C Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
20
miRTarBase ID miRNA Experiments Reference
MIRT018474 hsa-miR-335-5p Microarray 18185580
MIRT1457870 hsa-miR-1207-3p CLIP-seq
MIRT1457871 hsa-miR-1207-5p CLIP-seq
MIRT1457872 hsa-miR-1909 CLIP-seq
MIRT1457873 hsa-miR-3151 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
140
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000166 Function Nucleotide binding IEA
GO:0001666 Process Response to hypoxia IEA
GO:0002024 Process Diet induced thermogenesis IEA
GO:0003779 Function Actin binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605427 18083 ENSG00000111199
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9HBA0
Protein name Transient receptor potential cation channel subfamily V member 4 (TrpV4) (Osm-9-like TRP channel 4) (OTRPC4) (Transient receptor potential protein 12) (TRP12) (Vanilloid receptor-like channel 2) (Vanilloid receptor-like protein 2) (VRL-2) (Vanilloid recep
Protein function Non-selective calcium permeant cation channel involved in osmotic sensitivity and mechanosensitivity (PubMed:16293632, PubMed:18695040, PubMed:18826956, PubMed:22526352, PubMed:23136043, PubMed:29899501). Activation by exposure to hypotonicity w
PDB 4DX1 , 4DX2 , 7AA5 , 8FC7 , 8FC8 , 8FC9 , 8FCA , 8FCB , 8JU5 , 8JU6 , 8JVI , 8JVJ , 8T1B , 8T1C , 8T1D , 8T1E , 8T1F
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00023 Ank 237 268 Ankyrin repeat Repeat
PF00520 Ion_trans 469 730 Ion transport protein Family
Tissue specificity TISSUE SPECIFICITY: Found in the synoviocytes from patients with (RA) and without (CTR) rheumatoid arthritis (at protein level). {ECO:0000269|PubMed:19759329}.
Sequence
MADSSEGPRAGPGEVAELPGDESGTPGGEAFPLSSLANLFEGEDGSLSPSPADASRPAGP
GDGRPNLRMKFQGAFRKGVPNPIDLLESTLYESSVVPGPKKAPMDSLFDYGTYRHHSSDN
KRWRKKIIEKQPQSPKAPAPQPPPILKVFNRPILFDIVSRGSTADLDGLLPFLLTHKKRL
TDEEFREPSTGKTCLPKALLNLSNGRNDTIPVLLDIAERTGNMREFINSPFRDIYYRGQT
ALHIAIERRCKHYVELLVAQGADVHAQA
RGRFFQPKDEGGYFYFGELPLSLAACTNQPHI
VNYLTENPHKKADMRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDS
NLEAVLNNDGLSPLMMAAKTGKIGIFQHIIRREVTDEDTRHLSRKFKDWAYGPVYSSLYD
LSSLDTCGEEASVLEILVYNSKIENRHEMLAVEPINELLRDKWRKFGAVSFYINVVSYLC
AMVIFTLTAYYQPLEGTPPYPYRTTVDYLRLAGEVITLFTGVLFFFTNIKDLFMKKCPGV
NSLFIDGSFQLLYFIYSVLVIVSAALYLAGIEAYLAVMVFALVLGWMNALYFTRGLKLTG
TYSIMIQKILFKDLFRFLLVYLLFMIGYASALVSLLNPCANMKVCNEDQTNCTVPTYPSC
RDSETFSTFLLDLFKLTIGMGDLEMLSSTKYPVVFIILLVTYIILTFVLLLNMLIALMGE
TVGQVSKESK
HIWKLQWATTILDIERSFPVFLRKAFRSGEMVTVGKSSDGTPDRRWCFRV
DEVNWSHWNQNLGIINEDPGKNETYQYYGFSHTVGRLRRDRWSSVVPRVVELNKNSNPDE
VVVPLDSMGNPRCDGHQQGYPRKWRTDDAPL
Sequence length 871
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Cellular senescence
Inflammatory mediator regulation of TRP channels
Fluid shear stress and atherosclerosis
  TRP channels
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
92
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Auditory neuropathy Likely pathogenic rs1392028993 RCV003484471
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Brachyrachia (short spine dysplasia) Pathogenic; Likely pathogenic rs121912632, rs121912633, rs267607149 RCV000005280
RCV000005281
RCV001331193
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Charcot-Marie-Tooth disease Likely pathogenic; Pathogenic rs121912633, rs267607144, rs267607145, rs387906904, rs387906905 RCV001172890
RCV000192243
RCV000192245
RCV001172888
RCV000856932
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Charcot-Marie-Tooth disease axonal type 2C Likely pathogenic; Pathogenic rs1889549195, rs763354006, rs746368269, rs515726153, rs515726154, rs515726162, rs387906905, rs2136466291, rs868185064, rs769107613, rs2136468103, rs2136413100, rs1289139464, rs121912632, rs121912633
View all (17 more)
RCV001313495
RCV001349395
RCV001386963
RCV001854531
RCV003505097
View all (32 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Amyotrophic lateral sclerosis type 5 Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASEPTIC NECROSIS OF HEAD AND/OR NECK OF FEMUR Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT BRACHYOLMIA GenCC, Orphanet
GenCC, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Abducens Nerve Palsy Abducens palsy HPO_DG
★☆☆☆☆
Found in Text Mining only
Acoustic Neuroma Acoustic Neuroma BEFREE 19066426
★☆☆☆☆
Found in Text Mining only
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Acute Cerebrovascular Accidents Stroke BEFREE 28639721
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum BEFREE 11231025
★☆☆☆☆
Found in Text Mining only
Akinesia Akinesia BEFREE 21964829
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 21658220 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Aortic Valve Stenosis Aortic Valve Sclerosis BEFREE 29931225
★☆☆☆☆
Found in Text Mining only
Aplasia of muscle Aplasia Of Muscle HPO_DG
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 27191895, 27706112, 28602913
★☆☆☆☆
Found in Text Mining only