Gene Gene information from NCBI Gene database.
Entrez ID 5913
Gene name Receptor associated protein of the synapse
Gene symbol RAPSN
Synonyms (NCBI Gene)
CMS11CMS4CFADSFADS2RAPSYNRNF205
Chromosome 11
Chromosome location 11p11.2
Summary This gene encodes a member of a family of proteins that are receptor associated proteins of the synapse. The encoded protein contains a conserved cAMP-dependent protein kinase phosphorylation site, and plays a critical role in clustering and anchoring nic
SNPs SNP information provided by dbSNP.
33
SNP ID Visualize variation Clinical significance Consequence
rs45547231 G>A,T Benign, likely-benign, pathogenic Intron variant
rs56040810 C>T Conflicting-interpretations-of-pathogenicity Coding sequence variant, intron variant, synonymous variant
rs56245238 G>A Likely-benign, uncertain-significance, conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs104894293 A>G Pathogenic, likely-pathogenic Missense variant, coding sequence variant, intron variant
rs104894294 G>A Pathogenic, likely-pathogenic Missense variant, coding sequence variant
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
39
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 32814053
GO:0005737 Component Cytoplasm IEA
GO:0005794 Component Golgi apparatus IEA
GO:0005813 Component Centrosome IDA
GO:0005829 Component Cytosol IDA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601592 9863 ENSG00000165917
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q13702
Protein name 43 kDa receptor-associated protein of the synapse (RAPsyn) (43 kDa postsynaptic protein) (Acetylcholine receptor-associated 43 kDa protein) (RING finger protein 205)
Protein function Postsynaptic protein required for clustering of nicotinic acetylcholine receptors (nAChRs) at the neuromuscular junction. It may link the receptor to the underlying postsynaptic cytoskeleton, possibly by direct association with actin or spectrin
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF10579 Rapsyn_N 1 80 Rapsyn N-terminal myristoylation and linker region Family
PF17874 TPR_MalT 136 360 MalT-like TPR region Domain
PF13639 zf-RING_2 361 403 Ring finger domain Domain
Sequence
Sequence length 412
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
41
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the musculature Likely pathogenic; Pathogenic rs786200905 RCV001813966
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Congenital myasthenic syndrome Likely pathogenic; Pathogenic rs1421354085, rs749287203, rs104894294, rs2153308170, rs2496086825, rs786205885, rs104894299, rs786200905, rs121909254, rs886037842, rs767507908, rs1131691986, rs1479498379, rs1555142142, rs201947904
View all (3 more)
RCV001826152
RCV001826172
RCV004801090
RCV004782844
RCV005608855
View all (13 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Congenital myasthenic syndrome 11 Likely pathogenic; Pathogenic rs2153308410, rs1421354085, rs1262674788, rs1595899478, rs2153311231, rs749287203, rs2153311780, rs2153311290, rs2153309050, rs375218091, rs2076423585, rs2153311310, rs104894294, rs2076368388, rs760999895
View all (56 more)
RCV001377328
RCV001379323
RCV001390845
RCV001385002
RCV001382472
View all (71 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Congenital myasthenic syndrome 4C Likely pathogenic; Pathogenic rs104894299 RCV000008512
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANKYLOSING SPONDYLITIS AND OTHER INFLAMMATORY SPONDYLOPATHIES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Arthrogryposis multiplex congenita Conflicting classifications of pathogenicity ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Akinesia Akinesia HPO_DG
★☆☆☆☆
Found in Text Mining only
Arthrogryposis Arthrogryposis multiplex congenita CLINVAR_DG 31680123
★☆☆☆☆
Found in Text Mining only
Arthrogryposis Arthrogryposis multiplex congenita HPO_DG
★☆☆☆☆
Found in Text Mining only
Asthma Asthma BEFREE 21933193, 26283408
★☆☆☆☆
Found in Text Mining only
Autoimmune Diseases Autoimmune Diseases CTD_human_DG 9668287
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bipolar Disorder Bipolar Disorder BEFREE 31455761
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 27577081
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 27577081, 40430008 Associate
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate HPO_DG
★☆☆☆☆
Found in Text Mining only