Gene Gene information from NCBI Gene database.
Entrez ID 5832
Gene name Aldehyde dehydrogenase 18 family member A1
Gene symbol ALDH18A1
Synonyms (NCBI Gene)
ADCL3ARCL3AGSASP5CSPYCSSPG9SPG9ASPG9B
Chromosome 10
Chromosome location 10q24.1
Summary This gene is a member of the aldehyde dehydrogenase family and encodes a bifunctional ATP- and NADPH-dependent mitochondrial enzyme with both gamma-glutamyl kinase and gamma-glutamyl phosphate reductase activities. The encoded protein catalyzes the reduct
SNPs SNP information provided by dbSNP.
29
SNP ID Visualize variation Clinical significance Consequence
rs121434582 C>A,T Pathogenic, uncertain-significance Intron variant, missense variant, coding sequence variant
rs121434583 G>A Pathogenic Missense variant, coding sequence variant
rs150526956 G>A Conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, synonymous variant
rs374052426 G>A Likely-benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs537043237 C>T Likely-pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
168
miRTarBase ID miRNA Experiments Reference
MIRT022930 hsa-miR-124-3p Proteomics;Microarray 18668037
MIRT031825 hsa-miR-16-5p Proteomics 18668040
MIRT050486 hsa-miR-20a-5p CLASH 23622248
MIRT037662 hsa-miR-744-5p CLASH 23622248
MIRT625875 hsa-miR-4282 HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
34
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0003723 Function RNA binding HDA 22658674
GO:0003824 Function Catalytic activity IEA
GO:0004349 Function Glutamate 5-kinase activity IDA 11092761
GO:0004349 Function Glutamate 5-kinase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
138250 9722 ENSG00000059573
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P54886
Protein name Delta-1-pyrroline-5-carboxylate synthase (P5CS) (Aldehyde dehydrogenase family 18 member A1) [Includes: Glutamate 5-kinase (GK) (EC 2.7.2.11) (Gamma-glutamyl kinase); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydro
Protein function Bifunctional enzyme that converts glutamate to glutamate 5-semialdehyde, an intermediate in the biosynthesis of proline, ornithine and arginine. {ECO:0000269|PubMed:10037775, ECO:0000269|PubMed:11092761, ECO:0000269|PubMed:26297558, ECO:0000269|
PDB 2H5G
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00696 AA_kinase 71 329 Amino acid kinase family Family
PF00171 Aldedh 350 662 Aldehyde dehydrogenase family Family
Sequence
Sequence length 795
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Arginine and proline metabolism
Metabolic pathways
Biosynthesis of amino acids
  Glutamate and glutamine metabolism
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
52
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
ALDH18A1 deficiency Pathogenic rs864321670 RCV001095737
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
ALDH18A1-related de Barsy syndrome Pathogenic; Likely pathogenic rs587777858, rs2139621988, rs863225044, rs863225045, rs2526899878, rs2526671188, rs121434583, rs863223315, rs1555262375, rs1555264243, rs1194593234, rs556267618, rs748925635 RCV000144700
RCV002249243
RCV003883142
RCV000856780
RCV005255754
View all (8 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
ALDH18A1-related disorder Likely pathogenic; Pathogenic rs751181507, rs863225045, rs556267618 RCV005250265
RCV004530202
RCV002279963
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal dominant spastic paraplegia type 9 Pathogenic; Likely pathogenic rs145289559, rs1202802893, rs2139593958, rs1292403369, rs1055913716, rs2526897392, rs2526696945, rs751181507, rs752669339, rs864321670, rs863224945, rs863225045, rs1325257479, rs2526727709, rs2526900150
View all (8 more)
RCV003786044
RCV003771757
RCV003773210
RCV003774999
RCV003777006
View all (18 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormality of the nervous system Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT COMPLEX SPASTIC PARAPLEGIA TYPE 9B GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT CUTIS LAXA GWAS catalog, Orphanet
GWAS catalog, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT SPASTIC PARAPLEGIA TYPE 9A Disgenet, Orphanet
Disgenet, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma CTD_human_DG 27602772
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum BEFREE 23963297
★☆☆☆☆
Found in Text Mining only
Agenesis of Corpus Callosum Corpus callosum agenesis Pubtator 23963297, 32798076 Associate
★☆☆☆☆
Found in Text Mining only
ALDH18A1-related De Barsy syndrome De Barsy Syndrome Orphanet
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Alzheimer Disease Alzheimer disease Pubtator 17000046 Associate
★☆☆☆☆
Found in Text Mining only
Anarthria speech disorder Anarthria Speech Disorder HPO_DG
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm Aortic Aneurysm HPO_DG
★☆☆☆☆
Found in Text Mining only
Arcus Senilis Arcus Senilis HPO_DG
★☆☆☆☆
Found in Text Mining only
Atrophy of corpus callosum Atrophy Of Corpus Callosum HPO_DG
★☆☆☆☆
Found in Text Mining only