Gene Gene information from NCBI Gene database.
Entrez ID 5806
Gene name Pentraxin 3
Gene symbol PTX3
Synonyms (NCBI Gene)
TNFAIP5TSG-14
Chromosome 3
Chromosome location 3q25.32
Summary This gene encodes a member of the pentraxin protein family. The expression of this protein is induced by inflammatory cytokines in response to inflammatory stimuli in several mesenchymal and epithelial cell types, particularly endothelial cells and mononu
miRNA miRNA information provided by mirtarbase database.
148
miRTarBase ID miRNA Experiments Reference
MIRT005954 hsa-miR-21-5p Luciferase reporter assay 21131358
MIRT054880 hsa-miR-224-5p Luciferase reporter assayqRT-PCRWestern blot 24470395
MIRT736826 hsa-miR-377-3p RNA-seqqRT-PCR 33477862
MIRT1276844 hsa-miR-101 CLIP-seq
MIRT1276845 hsa-miR-144 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
29
GO ID Ontology Definition Evidence Reference
GO:0001550 Process Ovarian cumulus expansion IEA
GO:0001849 Function Complement component C1q complex binding IBA
GO:0001849 Function Complement component C1q complex binding IDA 23544079
GO:0001872 Function (1->3)-beta-D-glucan binding IEA
GO:0001878 Process Response to yeast IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602492 9692 ENSG00000163661
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P26022
Protein name Pentraxin-related protein PTX3 (Pentaxin-related protein PTX3) (Tumor necrosis factor alpha-induced protein 5) (TNF alpha-induced protein 5) (Tumor necrosis factor-inducible gene 14 protein) (TSG-14)
Protein function Plays a role in the regulation of innate resistance to pathogens, inflammatory reactions, possibly clearance of self-components and female fertility.
PDB 7ZL1 , 8PVQ , 8S50
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00354 Pentaxin 181 379 Pentaxin family Domain
Sequence
MHLLAILFCALWSAVLAENSDDYDLMYVNLDNEIDNGLHPTEDPTPCACGQEHSEWDKLF
IMLENSQMRERMLLQATDDVLRGELQRLREELGRLAESLARPCAPGAPAEARLTSALDEL
LQATRDAGRRLARMEGAEAQRPEEAGRALAAVLEELRQTRADLHAVQGWAARSWLPAGCE
TAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKATDVLNKTILFSYGTKRNPYEIQLYL
SYQSIVFVVGGEENKLVAEAMVSLGRWTHLCGTWNSEEGLTSLWVNGELAATTVEMATGH
IVPEGGILQIGQEKNGCCVGGGFDETLAFSGRLTGFNIWDSVLSNEEIRETGGAESCHIR
GNIVGWGVTEIQPHGGAQY
VS
Sequence length 381
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Neutrophil degranulation
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
11
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CYSTIC FIBROSIS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DEPRESSED MOOD Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DERMATOLOGIC DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Gastric cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Coronary Syndrome Coronary Syndrome BEFREE 24709882, 29741292, 31017470, 31147578
★☆☆☆☆
Found in Text Mining only
Acute intermittent porphyria Intermittent Porphyria BEFREE 27859020
★☆☆☆☆
Found in Text Mining only
Acute pancreatitis Pancreatitis BEFREE 28700471, 29593801, 31798002
★☆☆☆☆
Found in Text Mining only
Adenoma Adenoma BEFREE 28332877
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration BEFREE 26176960, 29374201, 31795454
★☆☆☆☆
Found in Text Mining only
Alveolitis, Fibrosing Alveolitis CTD_human_DG 22210019
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Alzheimer disease Pubtator 21112127 Associate
★☆☆☆☆
Found in Text Mining only
Amyloidosis Amyloidosis BEFREE 22632920
★☆☆☆☆
Found in Text Mining only
Anemia Anemia Pubtator 25401491 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Sickle Cell Sickle cell anemia Pubtator 23735470 Associate
★☆☆☆☆
Found in Text Mining only