Gene Gene information from NCBI Gene database.
Entrez ID 57822
Gene name Grainyhead like transcription factor 3
Gene symbol GRHL3
Synonyms (NCBI Gene)
SOMTFCP2L4VWS2
Chromosome 1
Chromosome location 1p36.11
Summary This gene encodes a member of the grainyhead family of transcription factors. The encoded protein may function as a transcription factor during development, and has been shown to stimulate migration of endothelial cells. Multiple transcript variants encod
SNPs SNP information provided by dbSNP.
12
SNP ID Visualize variation Clinical significance Consequence
rs752673677 G>A Pathogenic Coding sequence variant, missense variant
rs770938921 C>T Likely-pathogenic Missense variant, coding sequence variant
rs797044857 C>G Likely-pathogenic Missense variant, coding sequence variant, intron variant
rs879255243 GGAG>- Pathogenic Coding sequence variant, frameshift variant
rs879255244 G>T Pathogenic Splice donor variant
miRNA miRNA information provided by mirtarbase database.
73
miRTarBase ID miRNA Experiments Reference
MIRT017699 hsa-miR-335-5p Microarray 18185580
MIRT1034113 hsa-miR-1266 CLIP-seq
MIRT1034114 hsa-miR-1297 CLIP-seq
MIRT1034115 hsa-miR-1305 CLIP-seq
MIRT1034116 hsa-miR-147 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
41
GO ID Ontology Definition Evidence Reference
GO:0000785 Component Chromatin ISA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific IEA
GO:0000981 Function DNA-binding transcription factor activity, RNA polymerase II-specific ISA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608317 25839 ENSG00000158055
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8TE85
Protein name Grainyhead-like protein 3 homolog (Sister of mammalian grainyhead) (Transcription factor CP2-like 4)
Protein function Transcription factor playing important roles in primary neurulation and in the differentiation of stratified epithelia of both ectodermal and endodermal origin (By similarity). Binds directly to the consensus DNA sequence 5'-AACCGGTT-3' acting a
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04516 CP2 213 421 CP2 transcription factor Family
Tissue specificity TISSUE SPECIFICITY: Expressed in brain, colon, pancreas, placenta and kidney. Isoform 1 is expressed in lung and tonsil. Isoform 2 is prostate-specific. {ECO:0000269|PubMed:12549979}.
Sequence
MSNELDFRSVRLLKNDPVNLQKFSYTSEDEAWKTYLENPLTAATKAMMRVNGDDDSVAAL
SFLYDYYMGPKEKRILSSSTGGRNDQGKRYYHGMEYETDLTPLESPTHLMKFLTENVSGT
PEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPSKLEAGSVDSYLLPTTDMYDNGSLNSLF
ESIHGVPPTQRWQPDSTFKDDPQESMLFPDILKTSPEPPCPEDYPSLKSDFEYTLGSPKA
IHIKSGESPMAYLNKGQFYPVTLRTPAGGKGLALSSNKVKSVVMVVFDNEKVPVEQLRFW
KHWHSRQPTAKQRVIDVADCKENFNTVEHIEEVAYNALSFVWNVNEEAKVFIGVNCLSTD
FSSQKGVKGVPLNLQIDTYDCGLGTERLVHRAVCQIKIFCDKGAERKMRDDERKQFRRKV
K
CPDSSNSGVKGCLLSGFRGNETTYLRPETDLETPPVLFIPNVHFSSLQRSGGAAPSAGP
SSSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQRVLLYVRRETEEVFDALMLKTPDLKGL
RNAISEKYGFPEENIYKVYKKCKRGETSLLHPRLSRHPPPDCLECSHPVTQVRNMGFGDG
FWRQRDLDSNPSPTTVNSLHFTVNSE
Sequence length 626
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
23
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
GRHL3-related disorder Likely pathogenic rs2522621962 RCV003979740
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Isolated cleft palate Likely pathogenic; Pathogenic rs2148651821, rs1315515436, rs886037768, rs886037769, rs886037770 RCV001847296
RCV001847298
RCV001847915
RCV001847916
RCV001847917
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Van der Woude syndrome 2 Pathogenic; Likely pathogenic rs879255244, rs879255573, rs879255243, rs752673677, rs879255245, rs2522582333, rs2522646617, rs2522608482, rs1553172687 RCV001380488
RCV000087749
RCV000087750
RCV000087751
RCV000087752
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANKYLOSING SPONDYLITIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATOPIC ECZEMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BIFID UVULA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CLEFT OF HARD PALATE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acrania Acrania CTD_human_DG 6635991
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 26889815
★☆☆☆☆
Found in Text Mining only
Allergic sensitization Allergic Sensitization BEFREE 17083351
★☆☆☆☆
Found in Text Mining only
Anorexia Anorexia BEFREE 28758857
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder BEFREE 31275123
★☆☆☆☆
Found in Text Mining only
Anxiety Disorders Anxiety Disorder BEFREE 31275123
★☆☆☆☆
Found in Text Mining only
Barrett Esophagus Barrett esophagus Pubtator 29906417 Associate
★☆☆☆☆
Found in Text Mining only
Branchio-Oculo-Facial Syndrome Branchiooculofacial Syndrome BEFREE 26332872
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 24363083 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Carcinoma Pubtator 26837418 Associate
★☆☆☆☆
Found in Text Mining only