Gene Gene information from NCBI Gene database.
Entrez ID 57728
Gene name WD repeat domain 19
Gene symbol WDR19
Synonyms (NCBI Gene)
ATD5CED4CFAP66DYF-2FAP66IFT144NPHP13ORF26Oseg6PWDMPSPGF72SRTD5
Chromosome 4
Chromosome location 4p14
Summary The protein encoded by this gene is a member of the WD (tryptophan-aspartic acid) repeat family, which is a large family of structurally-related proteins known to participate in a wide range of cellular processes. Each WD repeat typically contains about 4
SNPs SNP information provided by dbSNP.
50
SNP ID Visualize variation Clinical significance Consequence
rs76599296 C>G Conflicting-interpretations-of-pathogenicity Missense variant, non coding transcript variant, coding sequence variant
rs79436363 G>A Pathogenic, uncertain-significance, pathogenic-likely-pathogenic Missense variant, genic downstream transcript variant, non coding transcript variant, coding sequence variant
rs141039852 G>A,C Conflicting-interpretations-of-pathogenicity Missense variant, genic downstream transcript variant, non coding transcript variant, coding sequence variant
rs187546086 A>C Uncertain-significance, conflicting-interpretations-of-pathogenicity Non coding transcript variant, genic downstream transcript variant, missense variant, coding sequence variant
rs199904529 G>A,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
61
miRTarBase ID miRNA Experiments Reference
MIRT017813 hsa-miR-335-5p Microarray 18185580
MIRT049394 hsa-miR-92a-3p CLASH 23622248
MIRT1489821 hsa-miR-1185 CLIP-seq
MIRT1489822 hsa-miR-132 CLIP-seq
MIRT1489823 hsa-miR-148a CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
46
GO ID Ontology Definition Evidence Reference
GO:0000902 Process Cell morphogenesis IEA
GO:0001701 Process In utero embryonic development IEA
GO:0001750 Component Photoreceptor outer segment IEA
GO:0005515 Function Protein binding IPI 27173435, 27932497, 28514442, 29220510, 33961781
GO:0005737 Component Cytoplasm IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608151 18340 ENSG00000157796
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8NEZ3
Protein name WD repeat-containing protein 19 (Intraflagellar transport 144 homolog)
Protein function As component of the IFT complex A (IFT-A), a complex required for retrograde ciliary transport and entry into cilia of G protein-coupled receptors (GPCRs), it is involved in cilia function and/or assembly (PubMed:20889716). Essential for functio
PDB 8BBF , 8BBG , 8FGW , 8FH3
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15911 WD40_3 508 564 WD domain, G-beta repeat Repeat
Tissue specificity TISSUE SPECIFICITY: Some isoforms are tissue-specific. Highly expressed in the prostate. Lower expression in the cerebellum, pituitary gland, fetal lung, and pancreas. In normal prostate, expressed in both basal and luminal epithelial cells. No expression
Sequence
MKRIFSLLEKTWLGAPIQFAWQKTSGNYLAVTGADYIVKIFDRHGQKRSEINLPGNCVAM
DWDKDGDVLAVIAEKSSCIYLWDANTNKTSQLDNGMRDQMSFLLWSKVGSFLAVGTVKGN
LLIYNHQTSRKIPVLGKHTKRITCGCWNAENLLALGGEDKMITVSNQEGDTIRQTQVRSE
PSNMQFFLMKMDDRTSAAESMISVVLGKKTLFFLNLNEPDNPADLEFQQDFGNIVCYNWY
GDGRIMIGFSCGHFVVISTHTGELGQEIFQARNHKDNLTSIAVSQTLNKVATCGDNCIKI
QDLVDLKDMYVILNLDEENKGLGTLSWTDDGQLLALSTQRGSLHVFLTKLPILGDACSTR
IAYLTSLLEVTVANPVEGELPITVSVDVEPNFVAVGLYHLAVGMNNRAWFYVLGENAVKK
LKDMEYLGTVASICLHSDYAAALFEGKVQLHLIESEILDAQEERETRLFPAVDDKCRILC
HALTSDFLIYGTDTGVVQYFYIEDWQFVNDYRHPVSVKKIFPDPNGTRLVFIDEKSDGFV
YCPVNDATYEIPDFSPTIKGVLWE
NWPMDKGVFIAYDDDKVYTYVFHKDTIQGAKVILAG
STKVPFAHKPLLLYNGELTCQTQSGKVNNIYLSTHGFLSNLKDTGPDELRPMLAQNLMLK
RFSDAWEMCRILNDEAAWNELARACLHHMEVEFAIRVYRRIGNVGIVMSLEQIKGIEDYN
LLAGHLAMFTNDYNLAQDLYLASSCPIAALEMRRDLQHWDSALQLAKHLAPDQIPFISKE
YAIQLEFAGDYVNALAHYEKGITGDNKEHDEACLAGVAQMSIRMGDIRRGVNQALKHPSR
VLKRDCGAILENMKQFSEAAQLYEKGLYYDKAASVYIRSKNWAKVGDLLPHVSSPKIHLQ
YAKAKEADGRYKEAVVAYENAKQWQSVIRIYLDHLNNPEKAVNIVRETQSLDGAKMVARF
FLQLGDYGSAIQFLVMSKCNNEAFTLAQQHNKMEIYADIIGSEDTTNEDYQSIALYFEGE
KRYLQAGKFFLLCGQYSRALKHFLKCPSSEDNVAIEMAIETVGQAKDELLTNQLIDHLLG
ENDGMPKDAKYLFRLYMALKQYREAAQTAIIIAREEQSAGNYRNAHDVLFSMYAELKSQK
IKIPSEMATNLMILHSYILVKIHVKNGDHMKGARMLIRVANNISKFPSHIVPILTSTVIE
CHRAGLKNSAFSFAAMLMRPEYRSKIDAKYKKKIEGMVRRPDISEIEEATTPCPFCKFLL
PECELLCPGCKNSIPYCIATGRHMLKDDWTVCPHCDFPALYSELKIMLNTESTCPMCSER
LNAAQLKKISDCTQYLRTEEEL
Sequence length 1342
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Hedgehog 'off' state
Intraflagellar transport
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
61
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Asphyxiating thoracic dystrophy 5 Likely pathogenic; Pathogenic rs1020915921, rs1221444922, rs756329385, rs753291151, rs778039192, rs1353172956, rs1730535406, rs2109377653, rs1421636172, rs775181779, rs587777348, rs587777351, rs79436363, rs587777352, rs2109497413
View all (57 more)
RCV001970776
RCV001377034
RCV001379131
RCV001379466
RCV001383659
View all (69 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Colon adenocarcinoma Likely pathogenic; Pathogenic rs587777352 RCV005887892
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cone dystrophy Likely pathogenic; Pathogenic rs775181779 RCV001591895
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Connective tissue disorder Likely pathogenic; Pathogenic rs587777352, rs387906980 RCV002277157
RCV002276570
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASPHYXIATING THORACIC DYSPLASIA JEUNE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bardet-Biedl syndrome Benign; Likely benign; Uncertain significance ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
BREAST CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Ataxia Telangiectasia Ataxia Telangiectasia BEFREE 23339108
★☆☆☆☆
Found in Text Mining only
Atrophoderma maculatum Anetoderma HPO_DG
★☆☆☆☆
Found in Text Mining only
Brachydactyly Brachydactyly HPO_DG
★☆☆☆☆
Found in Text Mining only
Brachydactyly Brachydactyly CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Camurati-Engelmann Syndrome Diaphyseal dysplasia BEFREE 29220510
★☆☆☆☆
Found in Text Mining only
Caroli Disease Caroli Disease BEFREE 23559409, 25726036
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Caroli Disease Caroli disease Pubtator 23559409 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Caroli Disease Caroli Disease CLINVAR_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cataract Cataract HPO_DG
★☆☆☆☆
Found in Text Mining only
Chronic interstitial nephritis Interstitial Nephritis HPO_DG
★☆☆☆☆
Found in Text Mining only