Gene Gene information from NCBI Gene database.
Entrez ID 57680
Gene name Chromodomain helicase DNA binding protein 8
Gene symbol CHD8
Synonyms (NCBI Gene)
AUTS18HELSNF1IDDAM
Chromosome 14
Chromosome location 14q11.2
Summary This gene encodes a member of the chromodomain-helicase-DNA binding protein family, which is characterized by a SNF2-like domain and two chromatin organization modifier domains. The encoded protein also contains brahma and kismet domains, which are common
SNPs SNP information provided by dbSNP.
56
SNP ID Visualize variation Clinical significance Consequence
rs61752839 T>C Likely-benign, conflicting-interpretations-of-pathogenicity Intron variant, coding sequence variant, synonymous variant
rs111250264 G>A Conflicting-interpretations-of-pathogenicity, likely-benign Missense variant, intron variant, coding sequence variant
rs181227407 T>A Conflicting-interpretations-of-pathogenicity Intron variant
rs377595194 C>G,T Conflicting-interpretations-of-pathogenicity Intron variant
rs397514551 G>A Risk-factor Coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
188
miRTarBase ID miRNA Experiments Reference
MIRT030570 hsa-miR-24-3p Microarray 19748357
MIRT039940 hsa-miR-615-3p CLASH 23622248
MIRT038139 hsa-miR-423-5p CLASH 23622248
MIRT037268 hsa-miR-877-5p CLASH 23622248
MIRT036108 hsa-miR-1296-5p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
66
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 25294932
GO:0000166 Function Nucleotide binding IEA
GO:0000785 Component Chromatin IBA
GO:0001701 Process In utero embryonic development IEA
GO:0001964 Process Startle response IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
610528 20153 ENSG00000100888
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9HCK8
Protein name Chromodomain-helicase-DNA-binding protein 8 (CHD-8) (EC 3.6.4.-) (ATP-dependent helicase CHD8) (Helicase with SNF2 domain 1)
Protein function ATP-dependent chromatin-remodeling factor, it slides nucleosomes along DNA; nucleosome sliding requires ATP (PubMed:28533432). Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppres
PDB 2CKA , 2DL6
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00385 Chromo 642 704 Chromo (CHRromatin Organisation MOdifier) domain Domain
PF00385 Chromo 724 778 Chromo (CHRromatin Organisation MOdifier) domain Domain
PF00176 SNF2_N 785 1101 SNF2 family N-terminal domain Family
PF00271 Helicase_C 1133 1247 Helicase conserved C-terminal domain Family
PF07533 BRK 2309 2352 BRK domain Domain
Sequence
MADPIMDLFDDPNLFGLDSLTDDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGGGDVGN
SSASELVPPPEETAPTELSKESTAPAPESITLHDYTTQPASQEQPAQPVLQTSTPTSGLL
QVSKSQEILSQGNPFMGVSATAVSSSSAGGQPPQSAPKIVILKAPPSSSVTGAHVAQIQA
QGITSTAQPLVAGTANGGKVTFTKVLTGTPLRPGVSIVSGNTVLAAKVPGNQAAVQRIVQ
PSRPVKQLVLQPVKGSAPAGNPGATGPPLKPAVTLTSTPTQGESKRITLVLQQPQSGGPQ
GHRHVVLGSLPGKIVLQGNQLAALTQAKNAQGQPAKVVTIQLQVQQPQQKIQIVPQPPSS
QPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRLSVPVKVVLQPQAGSSQGASSGLSVVK
VLSASEVAALSSPASSAPHSGGKTGMEENRRLEHQKKQEKANRIVAEAIARARARGEQNI
PRVLNEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVV
GKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEE
EVDVTGPIKPEPILPEPVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSG
QYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTK
MAQMRHFFHEDEEPFN
PDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQS
RHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGL
GKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQ
QYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKL
LDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQK
LQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTN
MPNLLNTMMELRKCCNHPYLI
NGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDK
LLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDS
DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG
QSKAVKVYRLITR
NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDD
EGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKK
ADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESEDDERPRSRRHDRHHA
YGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVETICRAILVYCLLHYRGDENI
KGFIWDLISPAENGKTKELQNHSGLSIPVPRGRKGKKVKSQSTFDIHKADWIRKYNPDTL
FQDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKVLGGAIASEIDIWFPVVDQLEV
PTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAAEHRVLDNFSD
IVEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEEISVIDGDEAQVTQQPGHLFWP
PGSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRRCEAAFKLKEIARREKQQRWTR
REQTDFYRVVSTFGVEYDPDTMQFHWDRFRTFARLDKKTDESLTKYFHGFVAMCRQVCRL
PPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLEDRLALCQPPGPEL
PKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGAPAPSLSRC
STPLLHQQYTSRTASPLPLRPDAPVEKSPEETATQVPSLESLTLKLEHEVVARSRPTPQD
YEMRVSPSDTTPLVSRSVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESED
EKEEKLTDQSRSKLYDEESLLSLTMSQDGFPNEDGEQMTPELLLLQERQRASEWPKDRVL
INRIDLVCQAVLSGKWPSSRRSQEMVTGGILGPGNHLLDSPSLTPGEYGDSPVPTPRSSS
AASMAEEEASAVSTAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHKLMANGVMGDGH
PLFHKKKGNRKKLVELEVECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMW
LQGHPEFAVDPR
FLAYMEDRRKQKWQRCKKNNKAELNCLGMEPVQTANSRNGKKGHHTET
VFNRVLPGPIAPESSKKRARRMRPDLSKMMALMQGGSTGSLSLHNTFQHSSSGLQSVSSL
GHSSATSASLPFMPFVMGGAPSSPHVDSSTMLHHHHHHPHPHHHHHHHPGLRAPGYPSSP
VTTASGTTLRLPPLQPEEDDDEDEEDDDDLSQGYDSSERDFSLIDDPMMPANSDSSEDAD
D
Sequence length 2581
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Wnt signaling pathway   Deactivation of the beta-catenin transactivating complex
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
39
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autism Pathogenic rs1555318552 RCV001251717
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autism spectrum disorder Pathogenic; Likely pathogenic rs2502001713, rs2501913432, rs1555314944, rs886039692, rs1064795655, rs1131691548, rs1454466097, rs1594344233, rs774152851 RCV003128057
RCV003128058
RCV003128059
RCV001265459
RCV001265457
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
CHD8-associated Neurodevelopmental syndrome Likely pathogenic rs2139499999 RCV002266643
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
CHD8-related disorder Likely pathogenic; Pathogenic rs751094013, rs746163664, rs1334692966, rs1373475251, rs1555318226, rs1555313658, rs2501888861, rs1057524677, rs991738444, rs1064795655, rs1555318734 RCV004550095
RCV004551941
RCV004551947
RCV004550665
RCV004552441
View all (6 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
14Q11.2 MICRODUPLICATION SYNDROME Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acute myeloid leukemia Likely benign; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANXIETY DISORDERS CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Autism Spectrum Disorder Autism Pubtator 22495309, 22495311, 23160955, 25989142, 27790361, 27824329, 28321286, 29317598, 30376831, 30392976, 31311581, 31526516, 32193494, 32918531, 33663567
View all (10 more)
Associate
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Autism Spectrum Disorders Autism Spectrum Disorder CLINGEN_DG 22083958, 22495309, 24998929, 26789910, 27602517, 27824329
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autism Spectrum Disorders Autism Spectrum Disorder BEFREE 23160955, 23285124, 24243641, 24998929, 25257502, 25294932, 25752243, 25989142, 26668231, 26789910, 26834018, 26921529, 28321286, 28322282, 28402856
View all (17 more)
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autism Spectrum Disorders Autism Spectrum Disorder CTD_human_DG 24998929, 28191889, 30670789
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism CLINVAR_DG 22495309, 23160955, 24998929, 26789910
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism BEFREE 22495311, 23801657, 24998929, 25257502, 25752243, 25989142, 26789910, 26921529, 28671691, 30277262, 30574290, 31721432
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism Pubtator 22495311, 22521361, 23801657, 24776741, 25961944, 25989142, 27790361, 27824329, 28321286, 29034068, 32918531, 34259569, 34415117, 35110736, 35205412
View all (5 more)
Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism GENOMICS_ENGLAND_DG 23160955
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism CTD_human_DG 25961944
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism HPO_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations