Gene Gene information from NCBI Gene database.
Entrez ID 57560
Gene name Intraflagellar transport 80
Gene symbol IFT80
Synonyms (NCBI Gene)
ATD2CFAP167FAP167SRTD2WDR56
Chromosome 3
Chromosome location 3q25.33
Summary The protein encoded by this gene is part of the intraflagellar transport complex B and is necessary for the function of motile and sensory cilia. Defects in this gene are a cause of asphyxiating thoracic dystrophy 2 (ATD2). Three transcript variants encod
miRNA miRNA information provided by mirtarbase database.
135
miRTarBase ID miRNA Experiments Reference
MIRT019786 hsa-miR-375 Microarray 20215506
MIRT1061093 hsa-let-7a CLIP-seq
MIRT1061094 hsa-let-7b CLIP-seq
MIRT1061095 hsa-let-7c CLIP-seq
MIRT1061096 hsa-let-7d CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
63
GO ID Ontology Definition Evidence Reference
GO:0001501 Process Skeletal system development IEA
GO:0001503 Process Ossification IEA
GO:0001649 Process Osteoblast differentiation IEA
GO:0001958 Process Endochondral ossification IEA
GO:0002062 Process Chondrocyte differentiation IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
611177 29262 ENSG00000068885
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9P2H3
Protein name Intraflagellar transport protein 80 homolog (WD repeat-containing protein 56)
Protein function Component of the intraflagellar transport (IFT) complex B, which is essential for the development and maintenance of motile and sensory cilia.
Family and domains
Tissue specificity TISSUE SPECIFICITY: Isoform IFT80-L is widely expressed. {ECO:0000269|PubMed:18601909}.
Sequence
MRLKISLLKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLTSETTQIVKLPDDIYPI
DFHWFPKSLGVKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTA
LVTVGEDGQIKIWSKTGMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAK
VLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSYGRPLYNSQPHEHPITSVAWAPD
GELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIAWSIDGTQIAGACGNGHVVFAHVVE
QHWEWKNFQVTLTKRRAMQVRNVLNDAVDLLEFRDRVIKASLNYAHLVVSTSLQCYVFST
KNWNTPIIFDLKEGTVSLILQAERHFLLVDGSSIYLYSYEGRFISSPKFPGMRTDILNAQ
TVSLSNDTIAIRDKADEKIIFLFEASTGKPLGDGKFLSHKNEILEIALDQKGLTNDRKIA
FIDKNRDLCITSVKRFGKEEQIIKLGTMVHTLAWNDTCNILCGLQDTRFIVWYYPNTVYV
DRDILPKTLYERDASEFSKNPHIVSFVGNQVTIRRADGSLVHISITPYPAILHEYVSSSK
WEDAVRLCRFVKEQTMWACLAAMAVANRDMTTAEIAYAAIGEIDKVQYINSIKNLPSKES
KMAHILLFSGNIQEAEIVLLQAGLVYQAIQININLYNWERALELAVKYKTHVDTVLAYRQ
KFLETFGKQETNKRYLHYAEGLQIDWEKIKAKIEMEITKEREQSSSSQSSKSIGLKP
Sequence length 777
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Intraflagellar transport
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
30
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Asphyxiating thoracic dystrophy 2 Likely pathogenic; Pathogenic rs1721846338, rs138004478, rs778324141, rs137853115, rs779179710, rs369779153, rs2473107231, rs369919590, rs431905497, rs202051267, rs1302753011, rs1241223548 RCV005038166
RCV000087065
RCV001802510
RCV000001044
RCV005034764
View all (7 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Familial cancer of breast Likely pathogenic rs2275152 RCV005930526
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Jeune thoracic dystrophy Likely pathogenic; Pathogenic rs777519235, rs1721846338, rs781436346, rs2108277143, rs2108362424, rs778324141, rs2108240653, rs1386720978, rs1450731316, rs2108234807, rs1182330004, rs2108404264, rs1307708371, rs1718069979, rs2275152
View all (25 more)
RCV001378040
RCV001378148
RCV001384026
RCV001385751
RCV001389037
View all (36 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Type IV short rib polydactyly syndrome Likely pathogenic; Pathogenic rs1553764834 RCV000515964
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ASPHYXIA CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BONE DISEASES, DEVELOPMENTAL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CLONAL HEMATOPOIESIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Agenesis of corpus callosum Agenesis Of Corpus Callosum HPO_DG
★☆☆☆☆
Found in Text Mining only
Ambiguous Genitalia Ambiguous Genitalia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anus, Imperforate Imperforate anus HPO_DG
★☆☆☆☆
Found in Text Mining only
Asphyxiating Thoracic Dystrophy 2 Asphyxiating Thoracic Dystrophy CLINVAR_DG 17468754, 19610081
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Asphyxiating Thoracic Dystrophy 2 Asphyxiating Thoracic Dystrophy UNIPROT_DG 17468754
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Asphyxiating Thoracic Dystrophy 2 Asphyxiating Thoracic Dystrophy GENOMICS_ENGLAND_DG 17468754, 19610081
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Asphyxiating Thoracic Dystrophy 2 Asphyxiating Thoracic Dystrophy CTD_human_DG
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Ataxia Telangiectasia Ataxia Telangiectasia BEFREE 19442771
★☆☆☆☆
Found in Text Mining only
Bare lymphocyte syndrome 2 Bare Lymphocyte Syndrome BEFREE 30767363
★☆☆☆☆
Found in Text Mining only
Bloom Syndrome Bloom Syndrome BEFREE 30767363
★☆☆☆☆
Found in Text Mining only