Gene Gene information from NCBI Gene database.
Entrez ID 57526
Gene name Protocadherin 19
Gene symbol PCDH19
Synonyms (NCBI Gene)
DEE9EFMREIEE9
Chromosome X
Chromosome location Xq22.1
Summary The protein encoded by this gene is a member of the delta-2 protocadherin subclass of the cadherin superfamily. The encoded protein is thought to be a calcium-dependent cell-adhesion protein that is primarily expressed in the brain. Mutations in this gene
SNPs SNP information provided by dbSNP.
155
SNP ID Visualize variation Clinical significance Consequence
rs34651888 T>-,TT Pathogenic Coding sequence variant, frameshift variant
rs132630323 A>T Pathogenic Coding sequence variant, missense variant
rs132630324 G>A Pathogenic Coding sequence variant, stop gained
rs132630325 G>C Pathogenic Coding sequence variant, stop gained
rs132630326 C>A,T Pathogenic Coding sequence variant, stop gained, missense variant
miRNA miRNA information provided by mirtarbase database.
189
miRTarBase ID miRNA Experiments Reference
MIRT053730 hsa-miR-624-3p Microarray 22942087
MIRT643749 hsa-miR-548m HITS-CLIP 23824327
MIRT618061 hsa-miR-208a-5p HITS-CLIP 23824327
MIRT618060 hsa-miR-208b-5p HITS-CLIP 23824327
MIRT618059 hsa-miR-198 HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
9
GO ID Ontology Definition Evidence Reference
GO:0005509 Function Calcium ion binding IEA
GO:0005886 Component Plasma membrane IBA
GO:0005886 Component Plasma membrane IEA
GO:0007155 Process Cell adhesion IBA
GO:0007155 Process Cell adhesion IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300460 14270 ENSG00000165194
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8TAB3
Protein name Protocadherin-19
Protein function Calcium-dependent cell-adhesion protein.
PDB 6VFU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08266 Cadherin_2 24 109 Cadherin-like Domain
PF00028 Cadherin 134 229 Cadherin domain Domain
PF00028 Cadherin 243 337 Cadherin domain Domain
PF00028 Cadherin 354 444 Cadherin domain Domain
PF00028 Cadherin 458 554 Cadherin domain Domain
PF00028 Cadherin 573 663 Cadherin domain Domain
Tissue specificity TISSUE SPECIFICITY: Moderately expressed in all regions of the brain examined, with lowest levels found in the cerebellum. Moderate expression is also found in ovary, and low expression in all other tissues tested. Also detected in primary skin fibroblast
Sequence
MESLLLPVLLLLAILWTQAAALINLKYSVEEEQRAGTVIANVAKDAREAGFALDPRQASA
FRVVSNSAPHLVDINPSSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSS
MEICVIKVEIK
DLNDNAPSFPAAQIELEISEAASPGTRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKT
RGDGSRFAELVVEKSLDRETQSHYSFRITALDGGDPPRLGTVGLSIKVT
DSNDNNPVFSE
STYAVSVPENSPPNTPVIRLNASDPDEGTNGQVVYSFYGYVNDRTRELFQIDPHSGLVTV
TGALDYEEGHVYELDVQAKDLGPNSIPAHCKVTVSVL
DTNDNPPVINLLSVNSELVEVSE
SAPPGYVIALVRVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYN
LTIQARDGGVPMLQSAKSFTVLIT
DENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDP
DLGLNGSVSYQIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGL
PSLQSNATVRVIIL
DVNDNTPVITAPPLINGTAEVYIPRNSGIGYLVTVVKAEDYDEGEN
GRVTYDMTEGDRGFFEIDQVNGEVRTTRTFGESSKSSYELIVVAHDHGKTSLSASALVLI
YLS
PALDAQESMGSVNLSLIFIIALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCSNCLT
ITCLLGCFIKGQNSKCLHCISVSPISEEQDKKTEEKVSLRGKRIAEYSYGHQKKSSKKKK
ISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT
RNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLE
GNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREE
CRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGK
DVSDHPAEERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPS
VSYTIALAPPARDLEQYVNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGV
KRLKDIVL
Sequence length 1148
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
41
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Bilateral tonic-clonic seizure Likely pathogenic rs2147539571, rs1569315842 RCV001808937
RCV000678822
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Complex febrile seizure Pathogenic rs1926541478 RCV001089582
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Developmental and epileptic encephalopathy, 9 Pathogenic; Likely pathogenic rs796052819, rs1928459143, rs796052813, rs764650219, rs796052807, rs2147542056, rs2147543046, rs2147485040, rs2147492627, rs2147492697, rs2147532974, rs2147533148, rs2147533439, rs1555984947, rs2147537315
View all (268 more)
RCV001323634
RCV001320718
RCV001350410
RCV001368289
RCV001379622
View all (301 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
developmental delay with seizures Likely pathogenic; Pathogenic rs772837341 RCV000678823
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Abnormal cerebral morphology Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autism spectrum disorder Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 9 Disgenet, HPO
Disgenet, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations