Gene Gene information from NCBI Gene database.
Entrez ID 57511
Gene name Component of oligomeric golgi complex 6
Gene symbol COG6
Synonyms (NCBI Gene)
CDG2LCOD2SHNS
Chromosome 13
Chromosome location 13q14.11
Summary This gene encodes a subunit of the conserved oligomeric Golgi complex that is required for maintaining normal structure and activity of the Golgi apparatus. The encoded protein is organized with conserved oligomeric Golgi complex components 5, 7 and 8 int
SNPs SNP information provided by dbSNP.
13
SNP ID Visualize variation Clinical significance Consequence
rs200177031 C>T Pathogenic Stop gained, coding sequence variant, non coding transcript variant
rs387906959 G>C,T Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs730882236 A>G Likely-pathogenic, pathogenic Intron variant
rs752232501 A>C,G Pathogenic Non coding transcript variant, initiator codon variant, missense variant
rs756826030 A>C,G Pathogenic Missense variant, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
139
miRTarBase ID miRNA Experiments Reference
MIRT640429 hsa-miR-551b-5p HITS-CLIP 23824327
MIRT640428 hsa-miR-34b-3p HITS-CLIP 23824327
MIRT640427 hsa-miR-5003-3p HITS-CLIP 23824327
MIRT640426 hsa-miR-6845-3p HITS-CLIP 23824327
MIRT640425 hsa-miR-7110-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
17
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IEA
GO:0000139 Component Golgi membrane NAS 27066481
GO:0000139 Component Golgi membrane TAS
GO:0000301 Process Retrograde transport, vesicle recycling within Golgi IMP 27066481
GO:0005515 Function Protein binding IPI 27107012, 28514442, 32296183, 33961781, 36217029
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606977 18621 ENSG00000133103
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9Y2V7
Protein name Conserved oligomeric Golgi complex subunit 6 (COG complex subunit 6) (Component of oligomeric Golgi complex 6)
Protein function Required for normal Golgi function.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06419 COG6 56 656 Conserved oligomeric complex COG6 Family
Sequence
Sequence length 657
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    COPI-mediated anterograde transport
Intra-Golgi traffic
Retrograde transport at the Trans-Golgi-Network
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
39
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
COG6-congenital disorder of glycosylation Likely pathogenic; Pathogenic rs781236436, rs2137942150, rs200812708, rs730882236, rs75701196, rs1345713239, rs2500684110, rs1190636194, rs2500752563, rs1879202581, rs387906959, rs1292534396, rs1259563970, rs200177031, rs756826030
View all (4 more)
RCV005232642
RCV001939452
RCV002049998
RCV001251035
RCV005215939
View all (14 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
COG6-related disorder Likely pathogenic; Pathogenic rs730882236, rs1453865021, rs1357662240 RCV000985030
RCV004529229
RCV004528747
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hypohidrosis Likely pathogenic; Pathogenic rs730882236 RCV000162165
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hypohidrosis-enamel hypoplasia-palmoplantar keratoderma-intellectual disability syndrome Pathogenic; Likely pathogenic rs2137942150, rs200812708, rs730882236, rs75701196, rs1345713239, rs1292534396, rs200177031 RCV001939452
RCV002049998
RCV000050228
RCV005215939
RCV003777577
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anhidrosis Anhidrosis BEFREE 26804344
★☆☆☆☆
Found in Text Mining only
Arthritis Juvenile Juvenile arthritis Pubtator 20722033 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 18369459, 20722033, 24532676 Associate
★☆☆☆☆
Found in Text Mining only
Asthma Asthma GWASCAT_DG 30929738
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autoimmune Diseases Autoimmune disease Pubtator 18369459, 20722033 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 34539936 Associate
★☆☆☆☆
Found in Text Mining only
Celiac Disease Celiac disease Pubtator 18369459 Associate
★☆☆☆☆
Found in Text Mining only
Cerebral atrophy Cerebral Atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Cholestasis Cholestasis HPO_DG
★☆☆☆☆
Found in Text Mining only