Gene Gene information from NCBI Gene database.
Entrez ID 56623
Gene name Inositol polyphosphate-5-phosphatase E
Gene symbol INPP5E
Synonyms (NCBI Gene)
CORS1CPD4JBTS1MORMSPPI5PIVpharbin
Chromosome 9
Chromosome location 9q34.3
Summary The protein encoded by this gene is an inositol 1,4,5-trisphosphate (InsP3) 5-phosphatase. InsP3 5-phosphatases hydrolyze Ins(1,4,5)P3, which mobilizes intracellular calcium and acts as a second messenger mediating cell responses to various stimulation. S
SNPs SNP information provided by dbSNP.
31
SNP ID Visualize variation Clinical significance Consequence
rs13297509 G>A,T Pathogenic, likely-benign Missense variant, non coding transcript variant, coding sequence variant, synonymous variant
rs121918127 G>A,C Pathogenic 3 prime UTR variant, non coding transcript variant, stop gained, coding sequence variant, missense variant
rs121918128 C>T Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs121918129 C>T Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs121918130 G>A,T Likely-pathogenic, pathogenic Coding sequence variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
52
miRTarBase ID miRNA Experiments Reference
MIRT039344 hsa-miR-425-5p CLASH 23622248
MIRT1067380 hsa-miR-1 CLIP-seq
MIRT1067381 hsa-miR-1273f CLIP-seq
MIRT1067382 hsa-miR-1284 CLIP-seq
MIRT1067383 hsa-miR-1293 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
46
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IEA
GO:0001726 Component Ruffle IEA
GO:0004439 Function Phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IBA
GO:0004439 Function Phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
GO:0004439 Function Phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity TAS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613037 21474 ENSG00000148384
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9NRR6
Protein name Phosphatidylinositol polyphosphate 5-phosphatase type IV (72 kDa inositol polyphosphate 5-phosphatase) (Inositol polyphosphate-5-phosphatase E) (Phosphatidylinositol 4,5-bisphosphate 5-phosphatase) (EC 3.1.3.36) (Phosphatidylinositol-3,4,5-trisphosphate 5
Protein function Phosphatidylinositol (PtdIns) phosphatase that specifically hydrolyzes the 5-phosphate of phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3), phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2) and phosphatidylinositol 3,5-bisphosphate
PDB 2XSW
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03372 Exo_endo_phos 304 584 Endonuclease/Exonuclease/phosphatase family Domain
Tissue specificity TISSUE SPECIFICITY: Detected in brain, heart, pancreas, testis and spleen. {ECO:0000269|PubMed:10764818}.
Sequence
MPSKAENLRPSEPAPQPPEGRTLQGQLPGAPPAQRAGSPPDAPGSESPALACSTPATPSG
EDPPARAAPIAPRPPARPRLERALSLDDKGWRRRRFRGSQEDLEARNGTSPSRGSVQSEG
PGAPAHSCSPPCLSTSLQEIPKSRGVLSSERGSPSSGGNPLSGVASSSPNLPHRDAAVAG
SSPRLPSLLPPRPPPALSLDIASDSLRTANKVDSDLADYKLRAQPLLVRAHSSLGPGRPR
SPLACDDCSLRSAKSSFSLLAPIRSKDVRSRSYLEGSLLASGALLGADELARYFPDRNVA
LFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHY
VLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLF
ITSHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNF
RLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGK
DTYDSTSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDH
RPVYGLFRVKVRPGRD
NIPLAAGKFDRELYLLGIKRRISKEIQRQQALQSQNSSTICSVS
Sequence length 644
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Inositol phosphate metabolism
Metabolic pathways
Phosphatidylinositol signaling system
  Synthesis of PIPs at the Golgi membrane
ARL13B-mediated ciliary trafficking of INPP5E
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
43
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
INPP5E-related disorder Pathogenic; Likely pathogenic rs1191043398, rs753398503, rs121918129, rs121918130, rs763992407, rs775518991, rs754637179, rs756789619, rs779450345, rs771866500, rs1346748926 RCV004757422
RCV004531191
RCV004755693
RCV004532266
RCV004529107
View all (6 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Joubert syndrome Likely pathogenic; Pathogenic rs775094328, rs992814593, rs1835733198, rs1191043398, rs753398503, rs2131608672, rs2131620472, rs2131605763, rs2131619961, rs756888841, rs2131604859, rs2131607846, rs2131620438, rs13297509, rs121918129
View all (28 more)
RCV001341624
RCV001871983
RCV001379011
RCV001388913
RCV001381205
View all (40 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Joubert syndrome 1 Likely pathogenic; Pathogenic rs992814593, rs121918127, rs13297509, rs121918128, rs121918129, rs121918130, rs1308391041, rs1359373777, rs886063713, rs756789619, rs142759730, rs771866500, rs763184652, rs779450345 RCV005050361
RCV005041961
RCV000022402
RCV000022403
RCV000022404
View all (9 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Joubert syndrome and related disorders Likely pathogenic; Pathogenic rs121918128, rs121918130, rs2131608743, rs2131605715, rs763992407, rs2538870759, rs863225200, rs746212325, rs2538869723, rs756789619, rs779450345, rs771866500, rs1588830568 RCV004700175
RCV002265543
RCV002222943
RCV002238655
RCV002238656
View all (8 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
BASAL CELL CARCINOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CHRONIC LUNG DISEASE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CILIARY MOTILITY DISORDERS CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adult Medulloblastoma Medulloblastoma BEFREE 28650469
★☆☆☆☆
Found in Text Mining only
Agenesis of Corpus Callosum Corpus callosum agenesis Pubtator 33270637 Associate
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum HPO_DG
★☆☆☆☆
Found in Text Mining only
Amenorrhea Amenorrhea Pubtator 34211432 Associate
★☆☆☆☆
Found in Text Mining only
Bardet-Biedl Syndrome Bardet-Biedl Syndrome BEFREE 19668215
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Cataract Cataract HPO_DG
★☆☆☆☆
Found in Text Mining only
Childhood Medulloblastoma Medulloblastoma BEFREE 28650469
★☆☆☆☆
Found in Text Mining only
Chronic Liver Failure Liver failure HPO_DG
★☆☆☆☆
Found in Text Mining only
Chronic lung disease Lung Diseases CLINVAR_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations