Gene Gene information from NCBI Gene database.
Entrez ID 5654
Gene name HtrA serine peptidase 1
Gene symbol HTRA1
Synonyms (NCBI Gene)
ARMD7CADASIL2CARASILHtrAL56ORF480PRSS11
Chromosome 10
Chromosome location 10q26.13
Summary This gene encodes a member of the trypsin family of serine proteases. This protein is a secreted enzyme that is proposed to regulate the availability of insulin-like growth factors (IGFs) by cleaving IGF-binding proteins. It has also been suggested to be
SNPs SNP information provided by dbSNP.
14
SNP ID Visualize variation Clinical significance Consequence
rs113993969 G>A Pathogenic Missense variant, coding sequence variant
rs113993970 C>T Pathogenic, likely-pathogenic Stop gained, coding sequence variant
rs113993971 C>T Pathogenic, likely-pathogenic Stop gained, coding sequence variant
rs149294320 C>A,T Uncertain-significance, conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, synonymous variant
rs373287445 C>A,G,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
70
miRTarBase ID miRNA Experiments Reference
MIRT021015 hsa-miR-155-5p Proteomics 18668040
MIRT030211 hsa-miR-26b-5p Microarray 19088304
MIRT032028 hsa-miR-16-5p Proteomics 18668040
MIRT646007 hsa-miR-186-3p HITS-CLIP 23824327
MIRT646006 hsa-miR-635 HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
32
GO ID Ontology Definition Evidence Reference
GO:0001890 Process Placenta development IEA
GO:0004252 Function Serine-type endopeptidase activity IBA
GO:0004252 Function Serine-type endopeptidase activity IEA
GO:0004252 Function Serine-type endopeptidase activity TAS 9852107
GO:0005515 Function Protein binding IPI 25002585, 26436840, 28726057, 29572155, 35063084
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602194 9476 ENSG00000166033
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q92743
Protein name Serine protease HTRA1 (EC 3.4.21.-) (High-temperature requirement A serine peptidase 1) (L56) (Serine protease 11)
Protein function Serine protease with a variety of targets, including extracellular matrix proteins such as fibronectin. HTRA1-generated fibronectin fragments further induce synovial cells to up-regulate MMP1 and MMP3 production. May also degrade proteoglycans,
PDB 2JOA , 2YTW , 3NUM , 3NWU , 3NZI , 3TJN , 3TJO , 3TJQ , 6Z0E , 6Z0X , 6Z0Y , 7SJN , 7SJO , 7SJP , 8SDM , 8SDP , 8SE7 , 8SE8
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00219 IGFBP 37 89 Insulin-like growth factor binding protein Domain
PF07648 Kazal_2 108 155 Kazal-type serine protease inhibitor domain Domain
PF13365 Trypsin_2 204 342 Domain
PF17820 PDZ_6 413 464 PDZ domain Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed, with strongest expression in placenta (at protein level). Secreted by synovial fibroblasts. Up-regulated in osteoarthritis and rheumatoid arthritis synovial fluids and cartilage as compared with non-arthritic (at prot
Sequence
Sequence length 480
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Degradation of the extracellular matrix
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
45
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Age related macular degeneration 7 Likely pathogenic; Pathogenic rs1432594571 RCV004066843
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
CARASIL syndrome Pathogenic; Likely pathogenic rs372750076, rs2133449474, rs587776445, rs587776448, rs864622781, rs113993971, rs113993970, rs113993969, rs113993968, rs768243150, rs587776873, rs1554950703, rs2097481554 RCV001802756
RCV001806399
RCV000144147
RCV000157766
RCV005412426
View all (8 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Cerebral arterial disease Likely pathogenic rs864622781 RCV005622179
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 2 Likely pathogenic; Pathogenic rs748074236, rs766433250, rs2097494390, rs2133449474, rs1432594571, rs2497622964, rs864622781, rs781563777, rs864622782, rs864622783, rs113993970, rs113993968, rs1554948318, rs1554950655, rs1273355332
View all (3 more)
RCV001542097
RCV004785272
RCV001785356
RCV001810331
RCV002251114
View all (14 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
BREAST CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST CARCINOMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BUTTERFLY-SHAPED PIGMENTARY MACULAR DYSTROPHY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CADASIL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Ablepharon macrostomia syndrome Ablepharon macrostomia syndrome Pubtator 31970928 Associate
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 24356998
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration BEFREE 17053108, 17053109, 17327825, 17426452, 17438519, 17467263, 17568988, 17659362, 17679948, 17692272, 17884985, 17904186, 18079691, 18097986, 18161619
View all (114 more)
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration LHGDN 17053108, 17053109, 17426452, 17438519, 17568988, 17692272, 17904186, 18079691, 18162041, 18301036, 18427598, 18682812, 19065273, 19187590
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration GWASCAT_DG 17053108, 20385819, 23326517, 28703135, 29346644
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration GWASDB_DG 17053108, 20385819, 23326517, 23577725
★☆☆☆☆
Found in Text Mining only
Age related macular degeneration Age-related macular degeneration GENOMICS_ENGLAND_DG
★☆☆☆☆
Found in Text Mining only
Aggressive Periodontitis Aggressive Periodontitis BEFREE 24979214
★☆☆☆☆
Found in Text Mining only
Alopecia Alopecia BEFREE 21215656
★☆☆☆☆
Found in Text Mining only
Alopecia Alopecia GENOMICS_ENGLAND_DG 26063658
★☆☆☆☆
Found in Text Mining only