Gene Gene information from NCBI Gene database.
Entrez ID 5625
Gene name Proline dehydrogenase 1
Gene symbol PRODH
Synonyms (NCBI Gene)
HSPOX2PIG6POXPRODH1TP53I6
Chromosome 22
Chromosome location 22q11.21
Summary This gene encodes a mitochondrial protein that catalyzes the first step in proline degradation. Mutations in this gene are associated with hyperprolinemia type 1 and susceptibility to schizophrenia 4 (SCZD4). This gene is located on chromosome 22q11.21, a
SNPs SNP information provided by dbSNP.
8
SNP ID Visualize variation Clinical significance Consequence
rs450046 C>A,G,T Risk-factor, benign, pathogenic Coding sequence variant, missense variant
rs1807467 C>A Risk-factor, pathogenic Coding sequence variant, missense variant
rs2870984 G>A Risk-factor, likely-pathogenic, likely-benign Coding sequence variant, missense variant
rs2904551 A>G Risk-factor, uncertain-significance, likely-pathogenic Coding sequence variant, missense variant
rs2904552 C>T Risk-factor, pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
23
miRTarBase ID miRNA Experiments Reference
MIRT004581 hsa-miR-23b-5p Luciferase reporter assayqRT-PCRWestern blot 20562915
MIRT004581 hsa-miR-23b-5p Luciferase reporter assayqRT-PCRWestern blot 20562915
MIRT2304431 hsa-miR-145 CLIP-seq
MIRT2304432 hsa-miR-1825 CLIP-seq
MIRT2304433 hsa-miR-1915 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
MYC Repression 22615405
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
24
GO ID Ontology Definition Evidence Reference
GO:0004657 Function Proline dehydrogenase activity EXP 15662599
GO:0004657 Function Proline dehydrogenase activity IBA
GO:0004657 Function Proline dehydrogenase activity IDA 15662599
GO:0004657 Function Proline dehydrogenase activity IEA
GO:0004657 Function Proline dehydrogenase activity TAS 10192398
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606810 9453 ENSG00000100033
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O43272
Protein name Proline dehydrogenase 1, mitochondrial (EC 1.5.5.2) (Proline oxidase) (Proline oxidase 2) (p53-induced gene 6 protein)
Protein function Converts proline to delta-1-pyrroline-5-carboxylate.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01619 Pro_dh 128 577 Proline dehydrogenase Family
Tissue specificity TISSUE SPECIFICITY: Expressed in lung, skeletal muscle and brain, to a lesser extent in heart and kidney, and weakly in liver, placenta and pancreas.
Sequence
Sequence length 600
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Arginine and proline metabolism
Metabolic pathways
  Proline catabolism
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
20
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Proline dehydrogenase deficiency Likely pathogenic; Pathogenic rs2082011693, rs1305005935, rs2146223995, rs2517463579, rs755378169, rs193919334, rs2870997, rs2517455884, rs2517453236, rs2517460527, rs1347601186, rs780557421, rs772562722 RCV005032779
RCV001926788
RCV001893771
RCV003080250
RCV003100205
View all (8 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Schizophrenia 4 Likely pathogenic; Pathogenic rs2082011693, rs2870997, rs780557421 RCV005032779
RCV005028313
RCV005037023
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AMINO ACID METABOLISM, INBORN ERRORS CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BIPOLAR DISORDER Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
22q11 Deletion Syndrome 22q11 deletion syndrome Pubtator 17028864, 18989458, 21738766, 26055684 Associate
★☆☆☆☆
Found in Text Mining only
22q11 Deletion Syndrome 22q11 deletion syndrome BEFREE 18989458, 26068888
★☆☆☆☆
Found in Text Mining only
Amino Acid Metabolism, Inborn Errors Disorder of amino acid metabolism CTD_human_DG 17412540
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Amino Acid Metabolism, Inherited Disorders Inherited Errors of Amino Acid Metabolism CTD_human_DG 17412540
★☆☆☆☆
Found in Text Mining only
ANOPHTHALMIA AND PULMONARY HYPOPLASIA Syndromic microphthalmia BEFREE 28685754
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder BEFREE 19232576
★☆☆☆☆
Found in Text Mining only
Anxiety Disorders Anxiety Disorder BEFREE 19232576
★☆☆☆☆
Found in Text Mining only
Autism Spectrum Disorder Autism Pubtator 25325218 Associate
★☆☆☆☆
Found in Text Mining only
Autism Spectrum Disorders Autism Spectrum Disorder BEFREE 25325218
★☆☆☆☆
Found in Text Mining only
Autistic Disorder Autism BEFREE 19736351
★☆☆☆☆
Found in Text Mining only