Gene Gene information from NCBI Gene database.
Entrez ID 5621
Gene name Prion protein (Kanno blood group)
Gene symbol PRNP
Synonyms (NCBI Gene)
ASCRAltPrPCD230CJDGSSKURUPRIPPrPPrP27-30PrP33-35CPrPcp27-30
Chromosome 20
Chromosome location 20p13
Summary The protein encoded by this gene is a membrane glycosylphosphatidylinositol-anchored glycoprotein that tends to aggregate into rod-like structures. The encoded protein contains a highly unstable region of five tandem octapeptide repeats. This gene is foun
SNPs SNP information provided by dbSNP.
25
SNP ID Visualize variation Clinical significance Consequence
rs1799990 A>G Risk-factor, pathogenic, benign Missense variant, coding sequence variant, 3 prime UTR variant
rs11538758 C>A,T Pathogenic Missense variant, coding sequence variant, 3 prime UTR variant
rs17852079 C>A,T Pathogenic Missense variant, coding sequence variant, 3 prime UTR variant, stop gained
rs28933385 G>A Pathogenic Missense variant, coding sequence variant, 3 prime UTR variant
rs74315401 C>T Pathogenic Coding sequence variant, missense variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
654
miRTarBase ID miRNA Experiments Reference
MIRT016426 hsa-miR-193b-3p Microarray 20304954
MIRT019398 hsa-miR-148b-3p Microarray 17612493
MIRT020222 hsa-miR-130b-3p Sequencing 20371350
MIRT024424 hsa-miR-215-5p Microarray 19074876
MIRT026010 hsa-miR-148a-3p Sequencing 20371350
Transcription factors Transcription factors information provided by TRRUST V2 database.
4
Transcription factor Regulation Reference
MTF1 Activation 18990686
SP1 Activation 18990686
SP1 Unknown 23131565
XBP1 Unknown 23737521
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
132
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISS
GO:0001540 Function Amyloid-beta binding IDA 24012003
GO:0001540 Function Amyloid-beta binding IEA
GO:0001540 Function Amyloid-beta binding IPI 22820466
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
176640 9449 ENSG00000171867
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P04156
Protein name Major prion protein (PrP) (ASCR) (PrP27-30) (PrP33-35C) (CD antigen CD230)
Protein function Its primary physiological function is unclear. May play a role in neuronal development and synaptic plasticity. May be required for neuronal myelin sheath maintenance. May promote myelin homeostasis through acting as an agonist for ADGRG6 recept
PDB 1E1G , 1E1J , 1E1P , 1E1S , 1E1U , 1E1W , 1FKC , 1FO7 , 1H0L , 1HJM , 1HJN , 1I4M , 1OEH , 1OEI , 1QLX , 1QLZ , 1QM0 , 1QM1 , 1QM2 , 1QM3 , 2IV4 , 2IV5 , 2IV6 , 2K1D , 2KUN , 2LBG , 2LEJ , 2LFT , 2LSB , 2LV1 , 2M8T , 2OL9 , 2W9E , 3HAF , 3HAK , 3HEQ , 3HER , 3HES , 3HJ5 , 3HJX , 3MD4 , 3MD5 , 3NHC , 3NHD , 3NVF , 4DGI , 4E1H , 4E1I , 4KML , 4N9O , 5L6R
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF11587 Prion_bPrPp 1 28 Major prion protein bPrPp - N terminal Family
PF00377 Prion 134 252 Prion/Doppel alpha-helical domain Domain
Sequence
MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP
HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA
VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV
NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV
ILLISFLIFLIV
G
Sequence length 253
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
F7VJQ1
Protein name Alternative prion protein (AltPrP)
Family and domains
Tissue specificity TISSUE SPECIFICITY: Detected in brain homogenate, primary neurons, and peripheral blood mononuclear cells (at protein level). {ECO:0000269|PubMed:21478263}.
Sequence
MEHWGQPIPGAGQPWRQPLPTSGRWWLGAASWWWLGAASWWWLGAAPWWWLGTASWWWLG
SRRWHPQSVEQAE
Sequence length 73
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Ferroptosis
Prion disease
Pathways of neurodegeneration - multiple diseases
  Insertion of tail-anchored proteins into the endoplasmic reticulum membrane
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
35
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
CEREBRAL AMYLOID ANGIOPATHY, PRNP-RELATED Pathogenic; Likely pathogenic rs80356710, rs80356711, rs398122414, rs1555782101 RCV000074469
RCV000074470
RCV000074471
RCV000074473
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Fatal familial insomnia Pathogenic; Likely pathogenic rs28933385, rs74315403 RCV000014335
RCV000020248
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Gerstmann-Straussler-Scheinker syndrome Likely pathogenic; Pathogenic rs74315410, rs193922906, rs74315401, rs74315402, rs74315403, rs74315405, rs74315406, rs11538758, rs74315413, rs74315415, rs17852079 RCV001809309
RCV000014327
RCV000014329
RCV000014330
RCV005252115
View all (7 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Huntington disease-like 1 Likely pathogenic; Pathogenic rs181348299, rs372878791, rs193922906, rs74315401, rs28933385, rs74315403, rs74315405, rs74315406, rs74315407, rs74315408, rs74315411, rs74315410, rs74315412, rs80356711 RCV002009625
RCV003064598
RCV000014328
RCV001203438
RCV000644587
View all (9 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMERS DISEASE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autism spectrum disorder Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CLINICAL DEPRESSION Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
5-oxoprolinase deficiency 5-oxoprolinase deficiency BEFREE 25851806
★☆☆☆☆
Found in Text Mining only
Action Myoclonus-Renal Failure Syndrome Action Myoclonus-Renal Failure Syndrome CTD_human_DG 25401298
★☆☆☆☆
Found in Text Mining only
Acute Cerebrovascular Accidents Stroke BEFREE 17149767
★☆☆☆☆
Found in Text Mining only
Acute Confusional Senile Dementia Senile Dementia CTD_human_DG 17192785
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma LHGDN 17234469
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma Adenocarcinoma BEFREE 28900035
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of large intestine Colorectal Cancer BEFREE 29527422
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 31477838
★☆☆☆☆
Found in Text Mining only
Adenomatous Polyposis Coli Multiple polyposis syndrome BEFREE 17676483
★☆☆☆☆
Found in Text Mining only
Akinetic Mutism Akinetic Mutism HPO_DG
★☆☆☆☆
Found in Text Mining only