Gene Gene information from NCBI Gene database.
Entrez ID 55906
Gene name Zinc finger C4H2-type containing
Gene symbol ZC4H2
Synonyms (NCBI Gene)
HCA127KIAA1166MCSMRXS4WRWFWRWFFRWWS
Chromosome X
Chromosome location Xq11.2
Summary This gene encodes a member of the zinc finger domain-containing protein family. This family member has a C-terminal zinc finger domain that is characterized by four cysteine residues and two histidine residues, and it also includes a coiled-coil region. T
SNPs SNP information provided by dbSNP.
21
SNP ID Visualize variation Clinical significance Consequence
rs137962226 G>A,T Benign, pathogenic, likely-pathogenic Coding sequence variant, non coding transcript variant, synonymous variant, missense variant
rs398122938 C>G Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs398122939 G>A Pathogenic Non coding transcript variant, synonymous variant, missense variant, coding sequence variant
rs750367160 TTC>- Pathogenic Coding sequence variant, non coding transcript variant, inframe deletion
rs797044863 G>A Pathogenic Stop gained, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
211
miRTarBase ID miRNA Experiments Reference
MIRT442883 hsa-miR-218-2-3p PAR-CLIP 22100165
MIRT442882 hsa-miR-4539 PAR-CLIP 22100165
MIRT442881 hsa-miR-182-3p PAR-CLIP 22100165
MIRT442880 hsa-miR-597-3p PAR-CLIP 22100165
MIRT442879 hsa-miR-152-5p PAR-CLIP 22100165
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
26
GO ID Ontology Definition Evidence Reference
GO:0003358 Process Noradrenergic neuron development IEA
GO:0005515 Function Protein binding IPI 16189514, 25416956, 26871637, 30177510, 31515488, 32296183, 33961781
GO:0005634 Component Nucleus IBA
GO:0005634 Component Nucleus IDA 23623388, 26056227
GO:0005634 Component Nucleus IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300897 24931 ENSG00000126970
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9NQZ6
Protein name Zinc finger C4H2 domain-containing protein (Hepatocellular carcinoma-associated antigen 127)
Protein function Plays a role in interneurons differentiation (PubMed:26056227). Involved in neuronal development and in neuromuscular junction formation.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF10146 zf-C4H2 13 147 Zinc finger-containing protein Family
PF10146 zf-C4H2 138 221 Zinc finger-containing protein Family
Tissue specificity TISSUE SPECIFICITY: Expressed in fetal tissues, including in brain, intestine, lung, kidney and muscle (PubMed:23623388). Isoform 1 is expressed in numerous fetal brain regions. Isoform 3 is highly expressed in numerous fetal brain regions and spinal cord
Sequence
Sequence length 224
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
20
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Neurodevelopmental disorder Likely pathogenic rs398122939 RCV001374903
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Nonpapillary renal cell carcinoma Likely pathogenic rs2147349618 RCV005917531
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Thyroid cancer, nonmedullary, 1 Likely pathogenic; Pathogenic rs1260869746 RCV005901425
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Wieacker-Wolff syndrome Likely pathogenic; Pathogenic rs2147349682, rs1057520297, rs1057520298, rs1057520299, rs1131691616, rs137962226, rs1555933616, rs1555945816, rs750367160, rs1260869746, rs398122938, rs879255235, rs398122939, rs879255236, rs1602379828
View all (6 more)
RCV001809225
RCV000425925
RCV000444927
RCV000426615
RCV000763627
View all (16 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ARTHROGRYPOSIS MULTIPLEX CONGENITA, DISTAL, X-LINKED CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DESBUQUOIS SYNDROME CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Genetic developmental and epileptic encephalopathy Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
HYPOGONADISM GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acrocephalopolysyndactyly type 2 Carpenter syndrome BEFREE 28345801
★☆☆☆☆
Found in Text Mining only
Acute lymphocytic leukemia Lymphocytic Leukemia BEFREE 3855666
★☆☆☆☆
Found in Text Mining only
Adult Acute Lymphocytic Leukemia Lymphocytic Leukemia BEFREE 3855666
★☆☆☆☆
Found in Text Mining only
Akinesia Akinesia BEFREE 31206972
★☆☆☆☆
Found in Text Mining only
Anemia Anemia BEFREE 31255504
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder BEFREE 27624747, 30302664, 31070268, 31428028, 31619069
★☆☆☆☆
Found in Text Mining only
Anxiety Disorders Anxiety Disorder BEFREE 27624747, 30302664, 31070268, 31428028, 31619069
★☆☆☆☆
Found in Text Mining only
Aortic Valve Insufficiency Aortic Valve Insufficiency BEFREE 28128540
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 26717272
★☆☆☆☆
Found in Text Mining only
Arthrogryposis Arthrogryposis multiplex congenita BEFREE 23623388, 29254829, 29803542, 31206972
★☆☆☆☆
Found in Text Mining only