Gene Gene information from NCBI Gene database.
Entrez ID 55612
Gene name FERM domain containing kindlin 1
Gene symbol FERMT1
Synonyms (NCBI Gene)
C20orf42DTGCU2KIND1UNC112AURP1
Chromosome 20
Chromosome location 20p12.3
Summary This gene encodes a member of the fermitin family, and contains a FERM domain and a pleckstrin homology domain. The encoded protein is involved in integrin signaling and linkage of the actin cytoskeleton to the extracellular matrix. Mutations in this gene
SNPs SNP information provided by dbSNP.
27
SNP ID Visualize variation Clinical significance Consequence
rs2232078 C>A,T Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, coding sequence variant
rs121918292 G>A Pathogenic Stop gained, coding sequence variant
rs121918293 G>A Pathogenic Stop gained, coding sequence variant
rs121918294 G>A,T Pathogenic Stop gained, coding sequence variant, synonymous variant
rs142328166 G>A,T Pathogenic Coding sequence variant, stop gained, synonymous variant
miRNA miRNA information provided by mirtarbase database.
153
miRTarBase ID miRNA Experiments Reference
MIRT021380 hsa-miR-9-5p Microarray 17612493
MIRT024326 hsa-miR-215-5p Microarray 19074876
MIRT026139 hsa-miR-192-5p Microarray 19074876
MIRT045760 hsa-miR-125a-5p CLASH 23622248
MIRT994715 hsa-miR-105 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
37
GO ID Ontology Definition Evidence Reference
GO:0001954 Process Positive regulation of cell-matrix adhesion IEA
GO:0005178 Function Integrin binding IBA
GO:0005737 Component Cytoplasm IDA 18528435
GO:0005737 Component Cytoplasm IEA
GO:0005829 Component Cytosol IDA 17012746
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607900 15889 ENSG00000101311
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9BQL6
Protein name Fermitin family homolog 1 (Kindlerin) (Kindlin syndrome protein) (Kindlin-1) (Unc-112-related protein 1)
Protein function Involved in cell adhesion. Contributes to integrin activation. When coexpressed with talin, potentiates activation of ITGA2B. Required for normal keratinocyte proliferation. Required for normal polarization of basal keratinocytes in skin, and fo
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18124 Kindlin_2_N 7 95 Kindlin-2 N-terminal domain Domain
PF00373 FERM_M 279 570 FERM central domain Domain
PF00169 PH 370 473 PH domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in brain, skeletal muscle, kidney, colon, adrenal gland, prostate, and placenta. Weakly or not expressed in heart, thymus, spleen, liver, small intestine, bone marrow, lung and peripheral blood leukocytes. Overexpressed in so
Sequence
MLSSTDFTFASWELVVRVDHPNEEQQKDVTLRVSGDLHVGGVMLKLVEQINISQDWSDFA
LWWEQKHCWLLKTHWTLDKYGVQADAKLLFTPQHK
MLRLRLPNLKMVRLRVSFSAVVFKA
VSDICKILNIRRSEELSLLKPSGDYFKKKKKKDKNNKEPIIEDILNLESSPTASGSSVSP
GLYSKTMTPIYDPINGTPASSTMTWFSDSPLTEQNCSILAFSQPPQSPEALADMYQPRSL
VDKAKLNAGWLDSSRSLMEQGIQEDEQLLLRFKYYSFFDLNPKYDAVRINQLYEQARWAI
LLEEIDCTEEEMLIFAALQYHISKLSLSAETQDFAGESEVDEIEAALSNLEVTLEGGKAD
SLLEDITDI
PKLADNLKLFRPKKLLPKAFKQYWFIFKDTSIAYFKNKELEQGEPLEKLNL
RGCEVVPDVNVAGRKFGIKLLIPVADGMNEMYLRCDHENQYAQWMAACMLASK
GKTMADS
SYQPEVLNILSFLRMKNRNSASQVASSLENMDMNPECFVSPRCAKRHKSKQLAARILEAH
QNVAQMPLVEAKLRFIQAWQSLPEFGLTYY
LVRFKGSKKDDILGVSYNRLIKIDAATGIP
VTTWRFTNIKQWNVNWETRQVVIEFDQNVFTAFTCLSADCKIVHEYIGGYIFLSTRSKDQ
NETLDEDLFHKLTGGQD
Sequence length 677
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
16
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the skin Likely pathogenic rs869312726 RCV001814118
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
FERMT1-related disorder Pathogenic rs121918293, rs146180696, rs748240859 RCV003894788
RCV004755812
RCV004755927
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Kindler syndrome Pathogenic; Likely pathogenic rs1982142302, rs1982268239, rs1983080839, rs2123118335, rs765716291, rs779915885, rs1411462678, rs121918292, rs1568654138, rs1568664492, rs121918293, rs121918294, rs869312721, rs869312731, rs869312718
View all (7 more)
RCV001352796
RCV001352794
RCV001352793
RCV001526461
RCV001783270
View all (17 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CROHN'S DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Gastric cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acrocephaly Acrocephaly HPO_DG
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 21832234
★☆☆☆☆
Found in Text Mining only
Amniotic Bands Amniotic Bands HPO_DG
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Atrophy Atrophy Pubtator 19762710, 19762715, 22466645, 26993041, 29634879 Associate
★☆☆☆☆
Found in Text Mining only
Bladder Neoplasm Bladder Neoplasm BEFREE 21832234
★☆☆☆☆
Found in Text Mining only
Blister Blister Pubtator 19758247, 19762710, 26993041 Associate
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 21832234, 29330144, 30477537
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 19723662, 30477537 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Carcinoma BEFREE 12697302
★☆☆☆☆
Found in Text Mining only