Gene Gene information from NCBI Gene database.
Entrez ID 55572
Gene name FAD dependent oxidoreductase domain containing 1
Gene symbol FOXRED1
Synonyms (NCBI Gene)
FP634H17MC1DN19
Chromosome 11
Chromosome location 11q24.2
Summary This gene encodes a protein that contains a FAD-dependent oxidoreductase domain. The encoded protein is localized to the mitochondria and may function as a chaperone protein required for the function of mitochondrial complex I. Mutations in this gene are
SNPs SNP information provided by dbSNP.
16
SNP ID Visualize variation Clinical significance Consequence
rs138061928 T>G Conflicting-interpretations-of-pathogenicity, uncertain-significance Coding sequence variant, non coding transcript variant, missense variant
rs145888229 G>A Likely-pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs267606829 C>T Pathogenic Non coding transcript variant, coding sequence variant, stop gained
rs267606830 A>C,G Pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs373075574 C>T Pathogenic, likely-pathogenic 5 prime UTR variant, missense variant, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
115
miRTarBase ID miRNA Experiments Reference
MIRT032389 hsa-let-7b-5p Proteomics 18668040
MIRT042937 hsa-miR-324-3p CLASH 23622248
MIRT1003709 hsa-miR-1827 CLIP-seq
MIRT1003710 hsa-miR-1914 CLIP-seq
MIRT1003711 hsa-miR-2682 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
10
GO ID Ontology Definition Evidence Reference
GO:0005737 Component Cytoplasm IBA
GO:0005739 Component Mitochondrion HTP 34800366
GO:0005739 Component Mitochondrion IDA 20858599
GO:0005739 Component Mitochondrion IEA
GO:0005743 Component Mitochondrial inner membrane IDA 25678554
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613622 26927 ENSG00000110074
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96CU9
Protein name FAD-dependent oxidoreductase domain-containing protein 1 (EC 1.-.-.-)
Protein function Required for the assembly of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) (PubMed:20858599, PubMed:25678554). Involved in mid-late stages of complex I assembly (PubMed:25678554). {ECO:0000269|PubMed:20858599, ECO:0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01266 DAO 65 455 FAD dependent oxidoreductase Domain
Sequence
Sequence length 486
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
13
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
FOXRED1-related disorder Pathogenic rs267606829 RCV003390625
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Leigh syndrome Likely pathogenic; Pathogenic rs398124308, rs1296948086, rs267606829, rs768720209, rs758408106, rs1555066709, rs1189650128 RCV000586362
RCV001334927
RCV001194045
RCV006263748
RCV003226822
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Mitochondrial complex I deficiency Likely pathogenic; Pathogenic rs398124308 RCV000190588
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Mitochondrial complex I deficiency, nuclear type 1 Likely pathogenic; Pathogenic rs398124308 RCV000778312
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Developmental delay Uncertain significance ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Gastric cancer Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
LEIGH SYNDROME WITH LEUKODYSTROPHY GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
MITOCHONDRIAL DISEASES CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 33482886 Associate
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 39684297 Associate
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Carcinogenesis Pubtator 39684297 Associate
★☆☆☆☆
Found in Text Mining only
Cerebellar atrophy Cerebellar atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Diabetes Mellitus Diabetes Mellitus HPO_DG
★☆☆☆☆
Found in Text Mining only
Dysarthria Dysarthria HPO_DG
★☆☆☆☆
Found in Text Mining only
Dysmorphic features Dysmorphic Features CLINVAR_DG 20818383, 20858599, 22499348, 27215383
★☆☆☆☆
Found in Text Mining only
Electron Transport Chain Deficiencies, Mitochondrial Mitochondrial Electron Transport Chain Deficiencies CTD_human_DG 20818383
★☆☆☆☆
Found in Text Mining only