Gene Gene information from NCBI Gene database.
Entrez ID 55343
Gene name Solute carrier family 35 member C1
Gene symbol SLC35C1
Synonyms (NCBI Gene)
CDG2CFUCT1
Chromosome 11
Chromosome location 11p11.2
Summary This gene encodes a GDP-fucose transporter that is found in the Golgi apparatus. Mutations in this gene result in congenital disorder of glycosylation type IIc. Multiple transcript variants encoding different isoforms have been found for this gene. [provi
SNPs SNP information provided by dbSNP.
8
SNP ID Visualize variation Clinical significance Consequence
rs28937886 C>G Pathogenic Coding sequence variant, missense variant, genic downstream transcript variant
rs28939087 C>T Pathogenic Coding sequence variant, missense variant, genic upstream transcript variant
rs111773874 G>A Conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, coding sequence variant, synonymous variant
rs398124345 G>A,T Pathogenic Missense variant, stop gained, coding sequence variant, genic upstream transcript variant
rs587777655 TCT>- Conflicting-interpretations-of-pathogenicity Coding sequence variant, genic upstream transcript variant, inframe deletion
miRNA miRNA information provided by mirtarbase database.
195
miRTarBase ID miRNA Experiments Reference
MIRT029512 hsa-miR-26b-5p Microarray 19088304
MIRT052607 hsa-let-7a-5p CLASH 23622248
MIRT059171 hsa-miR-30a-5p HITS-CLIP 22473208
MIRT059175 hsa-miR-30b-5p HITS-CLIP 22473208
MIRT059172 hsa-miR-30c-5p HITS-CLIP 22473208
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
20
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IDA 11326279
GO:0000139 Component Golgi membrane IEA
GO:0000139 Component Golgi membrane IEA
GO:0000139 Component Golgi membrane TAS
GO:0005457 Function GDP-fucose transmembrane transporter activity IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605881 20197 ENSG00000181830
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q96A29
Protein name GDP-fucose transporter 1 (Solute carrier family 35 member C1)
Protein function Antiporter specific for GDP-l-fucose and depending on the concomitant reverse transport of GMP. Involved in GDP-fucose import from the cytoplasm into the Golgi lumen. {ECO:0000269|PubMed:11326279, ECO:0000269|PubMed:11326280, ECO:0000269|PubMed:
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03151 TPT 39 338 Triose-phosphate Transporter family Family
Sequence
Sequence length 364
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Defective SLC35C1 causes congenital disorder of glycosylation 2C (CDG2C)
GDP-fucose biosynthesis
Transport of nucleotide sugars
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
12
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Leukocyte adhesion deficiency type II Pathogenic; Likely pathogenic rs398124345, rs2134598310, rs2134598287, rs1470970903, rs28939087, rs28937886, rs766512058, rs2085872592 RCV000133550
RCV001527370
RCV001543359
RCV002048367
RCV000005005
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATTENTION DEFICIT HYPERACTIVITY DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Congenital disorder of glycosylation Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL DISORDER OF GLYCOSYLATION, TYPE 2C CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Anxiety Anxiety Disorder HPO_DG
★☆☆☆☆
Found in Text Mining only
Autistic Disorder Autism HPO_DG
★☆☆☆☆
Found in Text Mining only
Brachydactyly Brachydactyly HPO_DG
★☆☆☆☆
Found in Text Mining only
Bronchiolitis Bronchiolitis HPO_DG
★☆☆☆☆
Found in Text Mining only
Cerebral cortical atrophy Cerebral cortical atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only
Colorectal Neoplasms Colorectal neoplasm Pubtator 31961998 Inhibit
★☆☆☆☆
Found in Text Mining only
Congenital disorder of glycosylation type 2C Congenital disorder of glycosylation Pubtator 24403049, 33391282, 35772493 Associate
★☆☆☆☆
Found in Text Mining only
Congenital disorder of glycosylation, type 2C Congenital disorder of glycosylation UNIPROT_DG 11326279, 11326280
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Congenital disorder of glycosylation, type 2C Congenital disorder of glycosylation GENOMICS_ENGLAND_DG 11326280, 12476046, 24403049, 27604308
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Congenital disorder of glycosylation, type 2C Congenital disorder of glycosylation CLINVAR_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations