Gene Gene information from NCBI Gene database.
Entrez ID 55315
Gene name Solute carrier family 29 member 3
Gene symbol SLC29A3
Synonyms (NCBI Gene)
ENT3HCLAPHJCDPHID
Chromosome 10
Chromosome location 10q22.1
Summary This gene encodes a nucleoside transporter. The encoded protein plays a role in cellular uptake of nucleosides, nucleobases, and their related analogs. Mutations in this gene have been associated with H syndrome, which is characterized by cutaneous hyperp
SNPs SNP information provided by dbSNP.
20
SNP ID Visualize variation Clinical significance Consequence
rs780668 C>T Drug-response, benign Non coding transcript variant, intron variant, coding sequence variant, missense variant
rs113542201 C>T Conflicting-interpretations-of-pathogenicity Non coding transcript variant, coding sequence variant, synonymous variant
rs121912583 G>A Pathogenic Non coding transcript variant, missense variant, 3 prime UTR variant, coding sequence variant
rs121912584 G>A Pathogenic Non coding transcript variant, missense variant, 3 prime UTR variant, coding sequence variant
rs139857136 G>T Likely-pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
119
miRTarBase ID miRNA Experiments Reference
MIRT017125 hsa-miR-335-5p Microarray 18185580
MIRT1358331 hsa-miR-1 CLIP-seq
MIRT1358332 hsa-miR-206 CLIP-seq
MIRT1358333 hsa-miR-3179 CLIP-seq
MIRT1358334 hsa-miR-3673 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
53
GO ID Ontology Definition Evidence Reference
GO:0005326 Function Neurotransmitter transmembrane transporter activity IDA 19164483
GO:0005337 Function Nucleoside transmembrane transporter activity IBA
GO:0005337 Function Nucleoside transmembrane transporter activity IDA 15701636, 20595384, 28729424
GO:0005337 Function Nucleoside transmembrane transporter activity IEA
GO:0005337 Function Nucleoside transmembrane transporter activity IMP 19164483
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
612373 23096 ENSG00000198246
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9BZD2
Protein name Equilibrative nucleoside transporter 3 (hENT3) (Solute carrier family 29 member 3)
Protein function Uniporter that mediates the facilitative transport of nucleoside across lysosomal and mitochondrial membranes (PubMed:15701636, PubMed:19164483, PubMed:20595384, PubMed:28729424). Functions as a non-electrogenic Na(+)-independent transporter (Pu
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01733 Nucleoside_tran 168 473 Nucleoside transporter Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed in both adult and fetal tissues (PubMed:15701636). Highest levels in placenta, uterus, ovary, spleen, lymph node and bone marrow (PubMed:15701636). Expressed in liver (PubMed:19164483). Lowest levels in brain and heart
Sequence
Sequence length 475
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Alcoholism   Defective SLC29A3 causes histiocytosis-lymphadenopathy plus syndrome (HLAS)
Transport of nucleosides and free purine and pyrimidine bases across the plasma membrane
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
32
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Clear cell carcinoma of kidney Likely pathogenic rs267607057 RCV005887144
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
H syndrome Pathogenic; Likely pathogenic rs1223982382, rs587780462, rs587780463, rs2131839011, rs2131796660, rs2131797156, rs2131851477, rs1166563034, rs121912583, rs267607056, rs121912584, rs869025176, rs869025177, rs267607057, rs267607058
View all (21 more)
RCV001380759
RCV000118376
RCV000118377
RCV001890965
RCV001930053
View all (32 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Pigmentary skin disorders Pathogenic rs121912584 RCV006255116
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
SLC29A3-related disorder Pathogenic; Likely pathogenic rs267607058, rs387907067 RCV003398400
RCV003398566
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acanthosis nigricans Benign; drug response ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL HEART DEFECTS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Alopecia Alopecia HPO_DG
★☆☆☆☆
Found in Text Mining only
Arcus Senilis Arcus Senilis HPO_DG
★☆☆☆☆
Found in Text Mining only
Autoinflammatory disorder Autoinflammatory Disease GENOMICS_ENGLAND_DG 22875837
★☆☆☆☆
Found in Text Mining only
Autoinflammatory disorder Autoinflammatory Disease BEFREE 23530176
★☆☆☆☆
Found in Text Mining only
Azoospermia Azoospermia HPO_DG
★☆☆☆☆
Found in Text Mining only
Brittle diabetes Brittle diabetes mellitus CTD_human_DG 19336477, 20140240
★☆☆☆☆
Found in Text Mining only
Bronchiectasis Bronchiectasis HPO_DG
★☆☆☆☆
Found in Text Mining only
Cervical lymphadenopathy Cervical lymphadenopathy HPO_DG
★☆☆☆☆
Found in Text Mining only
Chronic rhinitis Rhinitis HPO_DG
★☆☆☆☆
Found in Text Mining only
Clinodactyly Clinodactyly HPO_DG
★☆☆☆☆
Found in Text Mining only