Gene Gene information from NCBI Gene database.
Entrez ID 55217
Gene name Trimethyllysine hydroxylase, epsilon
Gene symbol TMLHE
Synonyms (NCBI Gene)
AUTSX6BBOX2TMLDTMLHTMLHEDXAP130
Chromosome X
Chromosome location Xq28
Summary This gene encodes the protein trimethyllysine dioxygenase which is the first enzyme in the carnitine biosynthesis pathway. Carnitine play an essential role in the transport of activated fatty acids across the inner mitochondrial membrane. The encoded prot
SNPs SNP information provided by dbSNP.
5
SNP ID Visualize variation Clinical significance Consequence
rs781889971 G>A Uncertain-significance, risk-factor Stop gained, coding sequence variant, non coding transcript variant
rs782624357 AT>- Pathogenic Coding sequence variant, genic downstream transcript variant, non coding transcript variant, frameshift variant
rs782785654 G>A Likely-pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs782792356 T>C Pathogenic Splice acceptor variant
rs869320708 C>G Risk-factor Missense variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
232
miRTarBase ID miRNA Experiments Reference
MIRT723259 hsa-miR-548ac HITS-CLIP 19536157
MIRT723258 hsa-miR-548bb-3p HITS-CLIP 19536157
MIRT723257 hsa-miR-548d-3p HITS-CLIP 19536157
MIRT723256 hsa-miR-548h-3p HITS-CLIP 19536157
MIRT723255 hsa-miR-548z HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
20
GO ID Ontology Definition Evidence Reference
GO:0005506 Function Iron ion binding IEA
GO:0005739 Component Mitochondrion HTP 34800366
GO:0005739 Component Mitochondrion IBA
GO:0005739 Component Mitochondrion IDA 15754339
GO:0005739 Component Mitochondrion IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300777 18308 ENSG00000185973
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9NVH6
Protein name Trimethyllysine dioxygenase, mitochondrial (EC 1.14.11.8) (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (Epsilon-trimethyllysine hydroxylase) (TML hydroxylase) (TML-alpha-ketoglutarate dioxygenase) (TML dioxygenase) (TMLD)
Protein function Converts trimethyllysine (TML) into hydroxytrimethyllysine (HTML) (PubMed:11431483, PubMed:23092983).
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06155 GBBH-like_N 40 134 Gamma-butyrobetaine hydroxylase-like, N-terminal Domain
PF02668 TauD 151 404 Taurine catabolism dioxygenase TauD, TfdA family Domain
Tissue specificity TISSUE SPECIFICITY: All isoforms, but isoform 8, are widely expressed in adult and fetal tissues. Isoform 8 is restricted to heart and skeletal muscle. {ECO:0000269|PubMed:15754339, ECO:0000269|PubMed:17408883}.
Sequence
Sequence length 421
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Lysine degradation
Metabolic pathways
  Carnitine synthesis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
14
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cerebellar vermis hypoplasia Likely pathogenic rs782785654 RCV000779662
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Congenital cerebellar hypoplasia Likely pathogenic rs782785654 RCV001258013
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Corpus callosum, agenesis of Likely pathogenic rs782785654 RCV000779662
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Epsilon-trimethyllysine hydroxylase deficiency Likely pathogenic; Pathogenic rs2124340926, rs782624357 RCV001728047
RCV000210877
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AUTISM SPECTRUM DISORDER ClinGen
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM, SUSCEPTIBILITY TO, X-LINKED 6 Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISTIC DISORDER CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Agenesis of corpus callosum Agenesis Of Corpus Callosum CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Autism Spectrum Disorder Autism Pubtator 23092983 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autism Spectrum Disorders Autism Spectrum Disorder BEFREE 23092983
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM, SUSCEPTIBILITY TO, X-LINKED 6 Autism, X-Linked UNIPROT_DG 21865298, 23092983
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM, SUSCEPTIBILITY TO, X-LINKED 6 Autism, X-Linked CLINVAR_DG 25943046
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM, SUSCEPTIBILITY TO, X-LINKED 6 Autism, X-Linked GENOMICS_ENGLAND_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism BEFREE 21865298, 22566635, 23092983, 25943046, 26089202, 28703319
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism Pubtator 21865298, 23092983 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism CTD_human_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autistic Disorder Autism HPO_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations