RIF1 (replication timing regulatory factor 1)

Gene

• Entrez ID: 55183
• Gene name: Replication timing regulatory factor 1
• Gene symbol: RIF1
• Synonyms (NCBI Gene): -
• Chromosome: 2
• Chromosome location: 2q23.3
• Summary: This gene encodes a protein that shares homology with the yeast teleomere binding protein, Rap1 interacting factor 1. This protein localizes to aberrant telomeres may be involved in DNA repair. Alternate splicing results in multiple transcript variants. [

miRNA

miRTarBase ID	miRNA	Experiments	Reference
MIRT020847	hsa-miR-155-5p	Proteomics	18668040
MIRT027046	hsa-miR-103a-3p	Sequencing	20371350
MIRT031776	hsa-miR-16-5p	Proteomics	18668040
MIRT050377	hsa-miR-24-3p	CLASH	23622248
MIRT048790	hsa-miR-93-5p	CLASH	23622248
MIRT047132	hsa-miR-183-5p	CLASH	23622248
MIRT044974	hsa-miR-186-5p	CLASH	23622248
MIRT039429	hsa-miR-421	CLASH	23622248
MIRT634014	hsa-miR-4284	HITS-CLIP	23824327
MIRT050377	hsa-miR-24-3p	HITS-CLIP	23824327
MIRT634013	hsa-miR-342-5p	HITS-CLIP	23824327
MIRT634012	hsa-miR-4664-5p	HITS-CLIP	23824327
MIRT634011	hsa-miR-4651	HITS-CLIP	23824327
MIRT634010	hsa-miR-608	HITS-CLIP	23824327
MIRT634009	hsa-miR-6747-5p	HITS-CLIP	23824327
MIRT634008	hsa-miR-92a-2-5p	HITS-CLIP	23824327
MIRT634007	hsa-miR-6742-5p	HITS-CLIP	23824327
MIRT634006	hsa-miR-7977	HITS-CLIP	23824327
MIRT634005	hsa-miR-6737-5p	HITS-CLIP	23824327
MIRT634004	hsa-miR-6812-5p	HITS-CLIP	23824327
MIRT634003	hsa-miR-6819-5p	HITS-CLIP	23824327
MIRT634014	hsa-miR-4284	HITS-CLIP	23824327
MIRT050377	hsa-miR-24-3p	HITS-CLIP	23824327
MIRT634013	hsa-miR-342-5p	HITS-CLIP	23824327
MIRT634012	hsa-miR-4664-5p	HITS-CLIP	23824327
MIRT634011	hsa-miR-4651	HITS-CLIP	23824327
MIRT634010	hsa-miR-608	HITS-CLIP	23824327
MIRT634009	hsa-miR-6747-5p	HITS-CLIP	23824327
MIRT634008	hsa-miR-92a-2-5p	HITS-CLIP	23824327
MIRT634007	hsa-miR-6742-5p	HITS-CLIP	23824327
MIRT634006	hsa-miR-7977	HITS-CLIP	23824327
MIRT634005	hsa-miR-6737-5p	HITS-CLIP	23824327
MIRT634004	hsa-miR-6812-5p	HITS-CLIP	23824327
MIRT634003	hsa-miR-6819-5p	HITS-CLIP	23824327
MIRT614595	hsa-miR-4524a-3p	HITS-CLIP	23824327
MIRT614594	hsa-miR-4737	HITS-CLIP	23824327
MIRT614593	hsa-miR-450a-5p	HITS-CLIP	23824327
MIRT614592	hsa-miR-129-5p	HITS-CLIP	23824327
MIRT085758	hsa-miR-6507-5p	PAR-CLIP	20371350
MIRT085757	hsa-miR-5580-3p	PAR-CLIP	20371350
MIRT571431	hsa-miR-15a-5p	PAR-CLIP	20371350
MIRT571430	hsa-miR-15b-5p	PAR-CLIP	20371350
MIRT031776	hsa-miR-16-5p	PAR-CLIP	20371350
MIRT571429	hsa-miR-195-5p	PAR-CLIP	20371350
MIRT571428	hsa-miR-424-5p	PAR-CLIP	20371350
MIRT571427	hsa-miR-497-5p	PAR-CLIP	20371350
MIRT571426	hsa-miR-6838-5p	PAR-CLIP	20371350
MIRT571425	hsa-miR-503-5p	PAR-CLIP	20371350
MIRT571424	hsa-miR-646	PAR-CLIP	20371350
MIRT085755	hsa-miR-4524a-5p	PAR-CLIP	20371350
MIRT085756	hsa-miR-4524b-5p	PAR-CLIP	20371350
MIRT462029	hsa-miR-7-1-3p	PAR-CLIP	23592263
MIRT462028	hsa-miR-7-2-3p	PAR-CLIP	23592263
MIRT298929	hsa-miR-5583-3p	PAR-CLIP	23592263
MIRT462027	hsa-miR-6871-5p	PAR-CLIP	23592263
MIRT462026	hsa-miR-4742-5p	PAR-CLIP	23592263
MIRT462025	hsa-miR-4269	PAR-CLIP	23592263
MIRT462023	hsa-miR-6715b-5p	PAR-CLIP	23592263
MIRT462024	hsa-miR-4514	PAR-CLIP	23592263
MIRT462022	hsa-miR-4692	PAR-CLIP	23592263
MIRT462021	hsa-miR-935	PAR-CLIP	23592263
MIRT462020	hsa-miR-494-3p	PAR-CLIP	23592263
MIRT462019	hsa-miR-4747-5p	PAR-CLIP	23592263
MIRT462018	hsa-miR-5196-5p	PAR-CLIP	23592263
MIRT462017	hsa-miR-4697-3p	PAR-CLIP	23592263
MIRT462016	hsa-miR-223-3p	PAR-CLIP	23592263
MIRT634014	hsa-miR-4284	HITS-CLIP	23824327
MIRT050377	hsa-miR-24-3p	HITS-CLIP	23824327
MIRT634013	hsa-miR-342-5p	HITS-CLIP	23824327
MIRT634012	hsa-miR-4664-5p	HITS-CLIP	23824327
MIRT634011	hsa-miR-4651	HITS-CLIP	23824327
MIRT634010	hsa-miR-608	HITS-CLIP	23824327
MIRT634009	hsa-miR-6747-5p	HITS-CLIP	23824327
MIRT634008	hsa-miR-92a-2-5p	HITS-CLIP	23824327
MIRT634007	hsa-miR-6742-5p	HITS-CLIP	23824327
MIRT634006	hsa-miR-7977	HITS-CLIP	23824327
MIRT634005	hsa-miR-6737-5p	HITS-CLIP	23824327
MIRT634004	hsa-miR-6812-5p	HITS-CLIP	23824327
MIRT634003	hsa-miR-6819-5p	HITS-CLIP	23824327
MIRT634014	hsa-miR-4284	HITS-CLIP	23824327
MIRT050377	hsa-miR-24-3p	HITS-CLIP	23824327
MIRT634013	hsa-miR-342-5p	HITS-CLIP	23824327
MIRT634012	hsa-miR-4664-5p	HITS-CLIP	23824327
MIRT634011	hsa-miR-4651	HITS-CLIP	23824327
MIRT634010	hsa-miR-608	HITS-CLIP	23824327
MIRT634009	hsa-miR-6747-5p	HITS-CLIP	23824327
MIRT634008	hsa-miR-92a-2-5p	HITS-CLIP	23824327
MIRT634007	hsa-miR-6742-5p	HITS-CLIP	23824327
MIRT634006	hsa-miR-7977	HITS-CLIP	23824327
MIRT634005	hsa-miR-6737-5p	HITS-CLIP	23824327
MIRT634004	hsa-miR-6812-5p	HITS-CLIP	23824327
MIRT634003	hsa-miR-6819-5p	HITS-CLIP	23824327
MIRT614595	hsa-miR-4524a-3p	HITS-CLIP	23824327
MIRT614594	hsa-miR-4737	HITS-CLIP	23824327
MIRT614593	hsa-miR-450a-5p	HITS-CLIP	23824327
MIRT614592	hsa-miR-129-5p	HITS-CLIP	23824327
MIRT085758	hsa-miR-6507-5p	PAR-CLIP	20371350
MIRT085757	hsa-miR-5580-3p	PAR-CLIP	20371350
MIRT571431	hsa-miR-15a-5p	PAR-CLIP	20371350
MIRT571430	hsa-miR-15b-5p	PAR-CLIP	20371350
MIRT031776	hsa-miR-16-5p	PAR-CLIP	20371350
MIRT571429	hsa-miR-195-5p	PAR-CLIP	20371350
MIRT571428	hsa-miR-424-5p	PAR-CLIP	20371350
MIRT571427	hsa-miR-497-5p	PAR-CLIP	20371350
MIRT571426	hsa-miR-6838-5p	PAR-CLIP	20371350
MIRT571425	hsa-miR-503-5p	PAR-CLIP	20371350
MIRT571424	hsa-miR-646	PAR-CLIP	20371350
MIRT085755	hsa-miR-4524a-5p	PAR-CLIP	20371350
MIRT085756	hsa-miR-4524b-5p	PAR-CLIP	20371350
MIRT462029	hsa-miR-7-1-3p	PAR-CLIP	23592263
MIRT462028	hsa-miR-7-2-3p	PAR-CLIP	23592263
MIRT298929	hsa-miR-5583-3p	PAR-CLIP	23592263
MIRT462027	hsa-miR-6871-5p	PAR-CLIP	23592263
MIRT462026	hsa-miR-4742-5p	PAR-CLIP	23592263
MIRT462025	hsa-miR-4269	PAR-CLIP	23592263
MIRT462023	hsa-miR-6715b-5p	PAR-CLIP	23592263
MIRT462024	hsa-miR-4514	PAR-CLIP	23592263
MIRT462022	hsa-miR-4692	PAR-CLIP	23592263
MIRT462021	hsa-miR-935	PAR-CLIP	23592263
MIRT462020	hsa-miR-494-3p	PAR-CLIP	23592263
MIRT462019	hsa-miR-4747-5p	PAR-CLIP	23592263
MIRT462018	hsa-miR-5196-5p	PAR-CLIP	23592263
MIRT462017	hsa-miR-4697-3p	PAR-CLIP	23592263
MIRT462016	hsa-miR-223-3p	PAR-CLIP	23592263
MIRT755558	miR-940	Luciferase reporter assay, Western blotting, qRT-PCR	35769514
MIRT1306622	hsa-miR-101	CLIP-seq
MIRT1306623	hsa-miR-103a	CLIP-seq
MIRT1306624	hsa-miR-107	CLIP-seq
MIRT1306625	hsa-miR-1273d	CLIP-seq
MIRT1306626	hsa-miR-1283	CLIP-seq
MIRT1306627	hsa-miR-1284	CLIP-seq
MIRT1306628	hsa-miR-1301	CLIP-seq
MIRT1306629	hsa-miR-144	CLIP-seq
MIRT1306630	hsa-miR-1825	CLIP-seq
MIRT1306631	hsa-miR-1913	CLIP-seq
MIRT1306632	hsa-miR-199a-5p	CLIP-seq
MIRT1306633	hsa-miR-199b-5p	CLIP-seq
MIRT1306634	hsa-miR-298	CLIP-seq
MIRT1306635	hsa-miR-3140-3p	CLIP-seq
MIRT1306636	hsa-miR-3158-5p	CLIP-seq
MIRT1306637	hsa-miR-3163	CLIP-seq
MIRT1306638	hsa-miR-3189-5p	CLIP-seq
MIRT1306639	hsa-miR-320e	CLIP-seq
MIRT1306640	hsa-miR-324-3p	CLIP-seq
MIRT1306641	hsa-miR-3646	CLIP-seq
MIRT1306642	hsa-miR-3671	CLIP-seq
MIRT1306643	hsa-miR-3678-3p	CLIP-seq
MIRT1306644	hsa-miR-3691-3p	CLIP-seq
MIRT1306645	hsa-miR-3944-5p	CLIP-seq
MIRT1306646	hsa-miR-4328	CLIP-seq
MIRT1306647	hsa-miR-4477a	CLIP-seq
MIRT1306648	hsa-miR-455-5p	CLIP-seq
MIRT1306649	hsa-miR-4639-5p	CLIP-seq
MIRT1306650	hsa-miR-4641	CLIP-seq
MIRT1306651	hsa-miR-4659a-3p	CLIP-seq
MIRT1306652	hsa-miR-4659b-3p	CLIP-seq
MIRT1306653	hsa-miR-4660	CLIP-seq
MIRT1306654	hsa-miR-4668-3p	CLIP-seq
MIRT1306655	hsa-miR-4678	CLIP-seq
MIRT1306656	hsa-miR-4686	CLIP-seq
MIRT1306657	hsa-miR-4705	CLIP-seq
MIRT1306658	hsa-miR-4758-3p	CLIP-seq
MIRT1306659	hsa-miR-4796-5p	CLIP-seq
MIRT1306660	hsa-miR-5047	CLIP-seq
MIRT1306661	hsa-miR-513a-3p	CLIP-seq
MIRT1306662	hsa-miR-513b	CLIP-seq
MIRT1306663	hsa-miR-544	CLIP-seq
MIRT1306664	hsa-miR-548a-5p	CLIP-seq
MIRT1306665	hsa-miR-548ab	CLIP-seq
MIRT1306666	hsa-miR-548ac	CLIP-seq
MIRT1306667	hsa-miR-548ae	CLIP-seq
MIRT1306668	hsa-miR-548aj	CLIP-seq
MIRT1306669	hsa-miR-548ak	CLIP-seq
MIRT1306670	hsa-miR-548am	CLIP-seq
MIRT1306671	hsa-miR-548b-5p	CLIP-seq
MIRT1306672	hsa-miR-548c-5p	CLIP-seq
MIRT1306673	hsa-miR-548d-3p	CLIP-seq
MIRT1306674	hsa-miR-548d-5p	CLIP-seq
MIRT1306675	hsa-miR-548h	CLIP-seq
MIRT1306676	hsa-miR-548i	CLIP-seq
MIRT1306677	hsa-miR-548j	CLIP-seq
MIRT1306678	hsa-miR-548k	CLIP-seq
MIRT1306679	hsa-miR-548l	CLIP-seq
MIRT1306680	hsa-miR-548w	CLIP-seq
MIRT1306681	hsa-miR-548x	CLIP-seq
MIRT1306682	hsa-miR-548y	CLIP-seq
MIRT1306683	hsa-miR-548z	CLIP-seq
MIRT1306684	hsa-miR-559	CLIP-seq
MIRT1306685	hsa-miR-586	CLIP-seq
MIRT1306686	hsa-miR-590-3p	CLIP-seq
MIRT1306687	hsa-miR-607	CLIP-seq
MIRT1306688	hsa-miR-656	CLIP-seq
MIRT1306689	hsa-miR-767-3p	CLIP-seq
MIRT1306627	hsa-miR-1284	CLIP-seq
MIRT1306690	hsa-miR-15a	CLIP-seq
MIRT1306691	hsa-miR-15b	CLIP-seq
MIRT1306692	hsa-miR-16	CLIP-seq
MIRT1306693	hsa-miR-195	CLIP-seq
MIRT1306634	hsa-miR-298	CLIP-seq
MIRT1306636	hsa-miR-3158-5p	CLIP-seq
MIRT1306639	hsa-miR-320e	CLIP-seq
MIRT1306641	hsa-miR-3646	CLIP-seq
MIRT1306694	hsa-miR-3662	CLIP-seq
MIRT1306695	hsa-miR-424	CLIP-seq
MIRT1306696	hsa-miR-4524	CLIP-seq
MIRT1306655	hsa-miR-4678	CLIP-seq
MIRT1306659	hsa-miR-4796-5p	CLIP-seq
MIRT1306697	hsa-miR-497	CLIP-seq
MIRT1306698	hsa-miR-503	CLIP-seq
MIRT1306662	hsa-miR-513b	CLIP-seq
MIRT1306699	hsa-miR-548aa	CLIP-seq
MIRT1306666	hsa-miR-548ac	CLIP-seq
MIRT1306700	hsa-miR-548c-3p	CLIP-seq
MIRT1306673	hsa-miR-548d-3p	CLIP-seq
MIRT1306683	hsa-miR-548z	CLIP-seq
MIRT1306685	hsa-miR-586	CLIP-seq
MIRT1306688	hsa-miR-656	CLIP-seq
MIRT1306701	hsa-miR-223	CLIP-seq
MIRT1306637	hsa-miR-3163	CLIP-seq
MIRT1306702	hsa-miR-3185	CLIP-seq
MIRT1306703	hsa-miR-361-5p	CLIP-seq
MIRT1306641	hsa-miR-3646	CLIP-seq
MIRT1306642	hsa-miR-3671	CLIP-seq
MIRT1306704	hsa-miR-4277	CLIP-seq
MIRT1306705	hsa-miR-4291	CLIP-seq
MIRT1306649	hsa-miR-4639-5p	CLIP-seq
MIRT1306654	hsa-miR-4668-3p	CLIP-seq
MIRT1306706	hsa-miR-545	CLIP-seq
MIRT1306707	hsa-miR-548p	CLIP-seq
MIRT1306687	hsa-miR-607	CLIP-seq
MIRT2090872	hsa-miR-1208	CLIP-seq
MIRT2090873	hsa-miR-1226	CLIP-seq
MIRT2090874	hsa-miR-1236	CLIP-seq
MIRT2090875	hsa-miR-124	CLIP-seq
MIRT1306625	hsa-miR-1273d	CLIP-seq
MIRT2090876	hsa-miR-197	CLIP-seq
MIRT2090877	hsa-miR-203	CLIP-seq
MIRT2090878	hsa-miR-205	CLIP-seq
MIRT2090879	hsa-miR-218	CLIP-seq
MIRT2090880	hsa-miR-224	CLIP-seq
MIRT2090881	hsa-miR-23a	CLIP-seq
MIRT2090882	hsa-miR-23b	CLIP-seq
MIRT2090883	hsa-miR-23c	CLIP-seq
MIRT1306634	hsa-miR-298	CLIP-seq
MIRT2090884	hsa-miR-3127-5p	CLIP-seq
MIRT1306636	hsa-miR-3158-5p	CLIP-seq
MIRT2090885	hsa-miR-3160-5p	CLIP-seq
MIRT1306639	hsa-miR-320e	CLIP-seq
MIRT1306641	hsa-miR-3646	CLIP-seq
MIRT2090886	hsa-miR-3653	CLIP-seq
MIRT2090887	hsa-miR-3658	CLIP-seq
MIRT1306642	hsa-miR-3671	CLIP-seq
MIRT2090888	hsa-miR-3714	CLIP-seq
MIRT2090889	hsa-miR-3910	CLIP-seq
MIRT2090890	hsa-miR-3923	CLIP-seq
MIRT2090891	hsa-miR-4264	CLIP-seq
MIRT2090892	hsa-miR-4477b	CLIP-seq
MIRT2090893	hsa-miR-450b-5p	CLIP-seq
MIRT2090894	hsa-miR-4637	CLIP-seq
MIRT2090895	hsa-miR-4666-5p	CLIP-seq
MIRT1306655	hsa-miR-4678	CLIP-seq
MIRT2090896	hsa-miR-4724-5p	CLIP-seq
MIRT2090897	hsa-miR-4733-3p	CLIP-seq
MIRT2090898	hsa-miR-4738-3p	CLIP-seq
MIRT2090899	hsa-miR-4778-3p	CLIP-seq
MIRT2090900	hsa-miR-4795-3p	CLIP-seq
MIRT2090901	hsa-miR-4797-3p	CLIP-seq
MIRT2090902	hsa-miR-4797-5p	CLIP-seq
MIRT2090903	hsa-miR-495	CLIP-seq
MIRT2090904	hsa-miR-506	CLIP-seq
MIRT2090905	hsa-miR-5096	CLIP-seq
MIRT1306661	hsa-miR-513a-3p	CLIP-seq
MIRT1306662	hsa-miR-513b	CLIP-seq
MIRT2090906	hsa-miR-518a-5p	CLIP-seq
MIRT2090907	hsa-miR-520d-5p	CLIP-seq
MIRT2090908	hsa-miR-524-5p	CLIP-seq
MIRT2090909	hsa-miR-527	CLIP-seq
MIRT1306666	hsa-miR-548ac	CLIP-seq
MIRT1306673	hsa-miR-548d-3p	CLIP-seq
MIRT1306683	hsa-miR-548z	CLIP-seq
MIRT1306687	hsa-miR-607	CLIP-seq
MIRT2090910	hsa-miR-664	CLIP-seq
MIRT1306622	hsa-miR-101	CLIP-seq
MIRT2090872	hsa-miR-1208	CLIP-seq
MIRT2090873	hsa-miR-1226	CLIP-seq
MIRT2090874	hsa-miR-1236	CLIP-seq
MIRT1306629	hsa-miR-144	CLIP-seq
MIRT2315513	hsa-miR-1910	CLIP-seq
MIRT2090876	hsa-miR-197	CLIP-seq
MIRT2090877	hsa-miR-203	CLIP-seq
MIRT2090878	hsa-miR-205	CLIP-seq
MIRT2090879	hsa-miR-218	CLIP-seq
MIRT2090880	hsa-miR-224	CLIP-seq
MIRT2090881	hsa-miR-23a	CLIP-seq
MIRT2090882	hsa-miR-23b	CLIP-seq
MIRT2090883	hsa-miR-23c	CLIP-seq
MIRT2315514	hsa-miR-3065-5p	CLIP-seq
MIRT2090884	hsa-miR-3127-5p	CLIP-seq
MIRT2315515	hsa-miR-3145-3p	CLIP-seq
MIRT2090885	hsa-miR-3160-5p	CLIP-seq
MIRT2315516	hsa-miR-3177-3p	CLIP-seq
MIRT2315517	hsa-miR-33a	CLIP-seq
MIRT2315518	hsa-miR-33b	CLIP-seq
MIRT1306641	hsa-miR-3646	CLIP-seq
MIRT2090886	hsa-miR-3653	CLIP-seq
MIRT2090887	hsa-miR-3658	CLIP-seq
MIRT1306694	hsa-miR-3662	CLIP-seq
MIRT1306642	hsa-miR-3671	CLIP-seq
MIRT1306643	hsa-miR-3678-3p	CLIP-seq
MIRT1306644	hsa-miR-3691-3p	CLIP-seq
MIRT2315519	hsa-miR-382	CLIP-seq
MIRT2090890	hsa-miR-3923	CLIP-seq
MIRT2315520	hsa-miR-3942-3p	CLIP-seq
MIRT2090891	hsa-miR-4264	CLIP-seq
MIRT1306646	hsa-miR-4328	CLIP-seq
MIRT2315521	hsa-miR-4422	CLIP-seq
MIRT2090892	hsa-miR-4477b	CLIP-seq
MIRT2090893	hsa-miR-450b-5p	CLIP-seq
MIRT2315522	hsa-miR-452	CLIP-seq
MIRT2315523	hsa-miR-455-3p	CLIP-seq
MIRT2090894	hsa-miR-4637	CLIP-seq
MIRT1306649	hsa-miR-4639-5p	CLIP-seq
MIRT1306651	hsa-miR-4659a-3p	CLIP-seq
MIRT1306652	hsa-miR-4659b-3p	CLIP-seq
MIRT2315524	hsa-miR-4662a-3p	CLIP-seq
MIRT2090895	hsa-miR-4666-5p	CLIP-seq
MIRT2315525	hsa-miR-4676-3p	CLIP-seq
MIRT2315526	hsa-miR-4693-5p	CLIP-seq
MIRT2315527	hsa-miR-4704-3p	CLIP-seq
MIRT2090897	hsa-miR-4733-3p	CLIP-seq
MIRT2090898	hsa-miR-4738-3p	CLIP-seq
MIRT2090899	hsa-miR-4778-3p	CLIP-seq
MIRT2090900	hsa-miR-4795-3p	CLIP-seq
MIRT2090901	hsa-miR-4797-3p	CLIP-seq
MIRT2315528	hsa-miR-489	CLIP-seq
MIRT2315529	hsa-miR-494	CLIP-seq
MIRT2090903	hsa-miR-495	CLIP-seq
MIRT2315530	hsa-miR-501-3p	CLIP-seq
MIRT2315531	hsa-miR-502-3p	CLIP-seq
MIRT2090905	hsa-miR-5096	CLIP-seq
MIRT1306661	hsa-miR-513a-3p	CLIP-seq
MIRT2090906	hsa-miR-518a-5p	CLIP-seq
MIRT2090907	hsa-miR-520d-5p	CLIP-seq
MIRT2090908	hsa-miR-524-5p	CLIP-seq
MIRT2090909	hsa-miR-527	CLIP-seq
MIRT1306663	hsa-miR-544	CLIP-seq
MIRT1306706	hsa-miR-545	CLIP-seq
MIRT1306666	hsa-miR-548ac	CLIP-seq
MIRT1306667	hsa-miR-548ae	CLIP-seq
MIRT1306668	hsa-miR-548aj	CLIP-seq
MIRT1306670	hsa-miR-548am	CLIP-seq
MIRT1306700	hsa-miR-548c-3p	CLIP-seq
MIRT1306673	hsa-miR-548d-3p	CLIP-seq
MIRT1306681	hsa-miR-548x	CLIP-seq
MIRT1306683	hsa-miR-548z	CLIP-seq
MIRT2315532	hsa-miR-579	CLIP-seq
MIRT1306687	hsa-miR-607	CLIP-seq
MIRT2315533	hsa-miR-629	CLIP-seq
MIRT1306688	hsa-miR-656	CLIP-seq
MIRT2315534	hsa-miR-889	CLIP-seq
MIRT2393755	hsa-miR-3124-3p	CLIP-seq
MIRT2393756	hsa-miR-3173-3p	CLIP-seq
MIRT2393757	hsa-miR-3612	CLIP-seq
MIRT2090886	hsa-miR-3653	CLIP-seq
MIRT2090887	hsa-miR-3658	CLIP-seq
MIRT2393758	hsa-miR-4428	CLIP-seq
MIRT2090892	hsa-miR-4477b	CLIP-seq
MIRT2393759	hsa-miR-4695-5p	CLIP-seq
MIRT2393760	hsa-miR-650	CLIP-seq
MIRT2393755	hsa-miR-3124-3p	CLIP-seq
MIRT2393756	hsa-miR-3173-3p	CLIP-seq
MIRT2090886	hsa-miR-3653	CLIP-seq
MIRT2090887	hsa-miR-3658	CLIP-seq
MIRT2393758	hsa-miR-4428	CLIP-seq
MIRT2090892	hsa-miR-4477b	CLIP-seq
MIRT2090894	hsa-miR-4637	CLIP-seq
MIRT2090898	hsa-miR-4738-3p	CLIP-seq

Gene ontology (GO)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000122	Process	Negative regulation of transcription by RNA polymerase II	IEA
GO:0000122	Process	Negative regulation of transcription by RNA polymerase II	ISS
GO:0000723	Process	Telomere maintenance	IBA
GO:0000723	Process	Telomere maintenance	IEA
GO:0000723	Process	Telomere maintenance	ISS
GO:0000781	Component	Chromosome, telomeric region	IEA
GO:0000785	Component	Chromatin	IEA
GO:0000785	Component	Chromatin	ISS
GO:0000793	Component	Condensed chromosome	IDA	15583028
GO:0001939	Component	Female pronucleus	IEA
GO:0001940	Component	Male pronucleus	IEA
GO:0005515	Function	Protein binding	IPI	22321011, 23333306, 27173435, 28241136, 28330616, 29203878, 29789392, 33961781, 34354233
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	IDA
GO:0005654	Component	Nucleoplasm	TAS
GO:0005694	Component	Chromosome	IEA
GO:0005737	Component	Cytoplasm	IEA
GO:0005819	Component	Spindle	IEA
GO:0005856	Component	Cytoskeleton	IEA
GO:0005886	Component	Plasma membrane	IDA
GO:0006281	Process	DNA repair	IEA
GO:0006974	Process	DNA damage response	IDA	28241136
GO:0006974	Process	DNA damage response	IEA
GO:0031509	Process	Subtelomeric heterochromatin formation	IEA
GO:0031509	Process	Subtelomeric heterochromatin formation	ISS
GO:0031965	Component	Nuclear membrane	IDA
GO:0035019	Process	Somatic stem cell population maintenance	IEA
GO:0035861	Component	Site of double-strand break	IDA	28241136
GO:0035861	Component	Site of double-strand break	IEA
GO:0043247	Process	Telomere maintenance in response to DNA damage	IDA	15583028
GO:0045814	Process	Negative regulation of gene expression, epigenetic	IEA
GO:0045814	Process	Negative regulation of gene expression, epigenetic	ISS
GO:0045830	Process	Positive regulation of isotype switching	IEA
GO:0045830	Process	Positive regulation of isotype switching	ISS
GO:0051233	Component	Spindle midzone	IDA	15583028
GO:0140445	Component	Chromosome, telomeric repeat region	IBA
GO:0140445	Component	Chromosome, telomeric repeat region	IEA
GO:0140445	Component	Chromosome, telomeric repeat region	ISS
GO:1990830	Process	Cellular response to leukemia inhibitory factor	IEA
GO:2000042	Process	Negative regulation of double-strand break repair via homologous recombination	IDA	23333306
GO:2000042	Process	Negative regulation of double-strand break repair via homologous recombination	IEA
GO:2001034	Process	Positive regulation of double-strand break repair via nonhomologous end joining	IDA	28241136
GO:2001034	Process	Positive regulation of double-strand break repair via nonhomologous end joining	IEA

Other IDs

• MIM: 608952
• HGNC: 23207
• e!Ensembl: ENSG00000080345

Protein

• UniProt ID: Q5UIP0
• Protein name: Telomere-associated protein RIF1 (Rap1-interacting factor 1 homolog)
• Protein function: Key regulator of TP53BP1 that plays a key role in the repair of double-strand DNA breaks (DSBs) in response to DNA damage: acts by promoting non-homologous end joining (NHEJ)-mediated repair of DSBs (PubMed:15342490, PubMed:28241136). In respons
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF12231	Rif1_N	19 → 361	Rap1-interacting factor 1 N terminal	Family

• Tissue specificity: TISSUE SPECIFICITY: Highly expressed in testis. {ECO:0000269|PubMed:15583028}.
• Sequence:

  MTARGQSPLAPLLETLEDPSASHGGQTDAYLTLTSRMTGEEGKEVITEIEKKLPRLYKVL
  KTHISSQNSELSSAALQALGFCLYNPKITSELSEANALELLSKLNDTIKNSDKNVRTRAL
  WVISKQTFPSEVVGKMVSSIIDSLEILFNKGETHSAVVDFEALNVIVRLIEQAPIQMGEE
  AVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKL
  FMSKNETYVLKLWPLFVKLLGRTLHRSGSFINSLLQLEELGFRSGAPMIKKIAFIAWKSL
  IDNFALNPDILCSAKRLKLLMQPLSSIHVRTETLALTKLEVWWYLLMRLGPHLPANFEQV
  CVPLIQSTISIDSNASPQGNSCHVATSPGLNPMTPVHKGASSPYGAPGTPRMNLSSNLGG
  MATIPSIQLLGLEMLLHFLLGPEALSFAKQNKLVLSLEPLEHPLISSPSFFSKHANTLIT
  AVHDSFVAVGKDAPDVVVSAIWKELISLVKSVTESGNKKEKPGSEVLTLLLKSLESIVKS
  EVFPVSKTLVLMEITIKGLPQKVLGSPAYQVANMDILNGTPALFLIQLIFNNFLECGVSD
  ERFFLSLESLVGCVLSGPTSPLAFSDSVLNVINQNAKQLENKEHLWKMWSVIVTPLTELI
  NQTNEVNQGDALEHNFSAIYGALTLPVNHIFSEQRFPVATMKTLLRTWSELYRAFARCAA
  LVATAEENLCCEELSSKIMSSLEDEGFSNLLFVDRIIYIITVMVDCIDFSPYNIKYQPKV
  KSPQRPSDWSKKKNEPLGKLTSLFKLIVKVIYSFHTLSFKEAHSDTLFTIGNSITGIISS
  VLGHISLPSMIRKIFATLTRPLALFYENSKLDEVPKVYSCLNNKLEKLLGEIIACLQFSY
  TGTYDSELLEQLSPLLCIIFLHKNKQIRKQSAQFWNATFAKVMMLVYPEELKPVLTQAKQ
  KFLLLLPGLETVEMMEESSGPYSDGTENSQLNVKISGMERKSNGKRDSFLAQTKNKKENM
  KPAAKLKLESSSLKVKGEILLEEEKSTDFVFIPPEGKDAKERILTDHQKEVLKTKRCDIP
  AMYNNLDVSQDTLFTQYSQEEPMEIPTLTRKPKEDSKMMITEEQMDSDIVIPQDVTEDCG
  MAEHLEKSSLSNNECGSLDKTSPEMSNSNNDERKKALISSRKTSTECASSTENSFVVSSS
  SVSNTTVAGTPPYPTSRRQTFITLEKFDGSENRPFSPSPLNNISSTVTVKNNQETMIKTD
  FLPKAKQREGTFSKSDSEKIVNGTKRSSRRAGKAEQTGNKRSKPLMRSEPEKNTEESVEG
  IVVLENNPPGLLNQTECVSDNQVHLSESTMEHDNTKLKAATVENAVLLETNTVEEKNVEI
  NLESKENTPPVVISADQMVNEDSQVQITPNQKTLRRSSRRRSEVVESTTESQDKENSHQK
  KERRKEEEKPLQKSPLHIKDDVLPKQKLIAEQTLQENLIEKGSNLHEKTLGETSANAETE
  QNKKKADPENIKSEGDGTQDIVDKSSEKLVRGRTRYQTRRASQGLLSSIENSESDSSEAK
  EEGSRKKRSGKWKNKSNESVDIQDQEEKVVKQECIKAENQSHDYKATSEEDVSIKSPICE
  KQDESNTVICQDSTVTSDLLQVPDDLPNVCEEKNETSKYAEYSFTSLPVPESNLRTRNAI
  KRLHKRDSFDNCSLGESSKIGISDISSLSEKTFQTLECQHKRSRRVRRSKGCDCCGEKSQ
  PQEKSLIGLKNTENNDVEISETKKADVQAPVSPSETSQANPYSEGQFLDEHHSVNFHLGL
  KEDNDTINDSLIVSETKSKENTMQESLPSGIVNFREEICDMDSSEAMSLESQESPNENFK
  TVGPCLGDSKNVSQESLETKEEKPEETPKMELSLENVTVEGNACKVTESNLEKAKTMELN
  VGNEASFHGQERTKTGISEEAAIEENKRNDDSEADTAKLNAKEVATEEFNSDISLSDNTT
  PVKLNAQTEISEQTAAGELDGGNDVSDLHSSEETNTKMKNNEEMMIGEAMAETGHDGETE
  NEGITTKTSKPDEAETNMLTAEMDNFVCDTVEMSTEEGIIDANKTETNTEYSKSEEKLDN
  NQMVMESDILQEDHHTSQKVEEPSQCLASGTAISELIIEDNNASPQKLRELDPSLVSAND
  SPSGMQTRCVWSPLASPSTSILKRGLKRSQEDEISSPVNKVRRVSFADPIYQAGLADDID
  RRCSIVRSHSSNSSPIGKSVKTSPTTQSKHNTTSAKGFLSPGSRSPKFKSSKKCLISEMA
  KESIPCPTESVYPPLVNCVAPVDIILPQITSNMWARGLGQLIRAKNIKTIGDLSTLTASE
  IKTLPIRSPKVSNVKKALRIYHEQQVKTRGLEEIPVFDISEKTVNGIENKSLSPDEERLV
  SDIIDPVALEIPLSKNLLAQISALALQLDSEDLHNYSGSQLFEMHEKLSCMANSVIKNLQ
  SRWRSPSHENSI

• Sequence length: 2472

Pathways

KEGG:

Signaling pathways regulating pluripotency of stem cells

Reactome:

Nonhomologous End-Joining (NHEJ)

Associated diseases

Evidence Score:

• ★☆☆☆☆  Gene-disease association found in Text Mining only
• ★★☆☆☆  Found in Text Mining and Unknown/Other Associations
• ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources
• ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants)
• ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Unknown / Other Associations
Phenotype Name	Clinical Significance	Source	Evidence Score
ALZHEIMER DISEASE	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
ARTHROGRYPOSIS MULTIPLEX CONGENITA 6	—	Disgenet	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
CONGENITAL ANOMALY OF NECK	—	Disgenet	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
CONGENITAL MUSCULAR DYSTROPHY	—	Disgenet	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
DEGLUTITION DISORDERS	—	Disgenet	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
LUNG ADENOCARCINOMA	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
LUNG CANCER	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
LUNG CARCINOMA	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Lymphoma	Likely benign	ClinVar	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
MAJOR DEPRESSIVE DISORDER	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
MUSCULAR DYSTROPHY	—	Disgenet	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
MYOPATHIES, NEMALINE	—	Disgenet	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
NEMALINE MYOPATHY 2	—	Disgenet	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Nonpapillary renal cell carcinoma	Likely benign	ClinVar	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
PERIPHERAL NEUROPATHY	—	Disgenet	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
PROSTATE CANCER	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
PROSTATE CARCINOMA	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations
SQUAMOUS CELL CARCINOMA	—	GWAS catalog	★★☆☆☆ Found in Text Mining + Unknown/Other Associations