Gene Gene information from NCBI Gene database.
Entrez ID 55140
Gene name Elongator acetyltransferase complex subunit 3
Gene symbol ELP3
Synonyms (NCBI Gene)
KAT9
Chromosome 8
Chromosome location 8p21.1
Summary ELP3 is the catalytic subunit of the histone acetyltransferase elongator complex, which contributes to transcript elongation and also regulates the maturation of projection neurons (Creppe et al., 2009 [PubMed 19185337]).[supplied by OMIM, Apr 2009]
miRNA miRNA information provided by mirtarbase database.
306
miRTarBase ID miRNA Experiments Reference
MIRT031429 hsa-miR-16-5p Proteomics 18668040
MIRT041378 hsa-miR-193b-3p CLASH 23622248
MIRT038216 hsa-miR-342-5p CLASH 23622248
MIRT526162 hsa-miR-5583-3p HITS-CLIP 23313552
MIRT690167 hsa-miR-4293 HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
38
GO ID Ontology Definition Evidence Reference
GO:0000049 Function TRNA binding IEA
GO:0001764 Process Neuron migration IEA
GO:0001764 Process Neuron migration ISS
GO:0002098 Process TRNA wobble uridine modification IDA 29415125
GO:0002098 Process TRNA wobble uridine modification NAS 27847465
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
612722 20696 ENSG00000134014
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9H9T3
Protein name Elongator complex protein 3 (hELP3) (EC 2.3.1.311) (tRNA uridine(34) acetyltransferase)
Protein function Catalytic tRNA acetyltransferase subunit of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl
PDB 8PTX , 8PTY , 8PTZ , 8PU0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04055 Radical_SAM 96 305 Radical SAM superfamily Domain
PF16199 Radical_SAM_C 312 393 Radical_SAM C-terminal domain Family
PF00583 Acetyltransf_1 398 535 Acetyltransferase (GNAT) family Family
Tissue specificity TISSUE SPECIFICITY: Expressed in the cerebellum and spinal motor neurons. {ECO:0000269|PubMed:18996918}.
Sequence
Sequence length 547
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
7
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Amyotrophic lateral sclerosis Uncertain significance ClinVar
Disgenet
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
BREAST NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
METABOLIC SYNDROME GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
SCOLIOSIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis LHGDN 18996918
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis BEFREE 20626565, 22470424, 29415125
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 22470424 Associate
★★★☆☆
Reported in Unknown/Other Associations (≥2 sources)
Breast Carcinoma Breast Carcinoma BEFREE 27811057
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma CTD_human_DG 27811057
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Carcinogenesis Pubtator 32186433 Associate
★☆☆☆☆
Found in Text Mining only
Chronic Obstructive Airway Disease Chronic Obstructive Pulmonary Disease BEFREE 30017196
★☆☆☆☆
Found in Text Mining only
Dysautonomia, Familial Dysautonomia BEFREE 20626565
★☆☆☆☆
Found in Text Mining only
Frontotemporal Dementia Frontotemporal dementia Pubtator 25239657 Associate
★☆☆☆☆
Found in Text Mining only
Hypoxia Hypoxia Pubtator 32186433 Stimulate
★☆☆☆☆
Found in Text Mining only