Gene Gene information from NCBI Gene database.
Entrez ID 55036
Gene name Coiled-coil domain 40 molecular ruler complex subunit
Gene symbol CCDC40
Synonyms (NCBI Gene)
CFAP172CILD15FAP172
Chromosome 17
Chromosome location 17q25.3
Summary This gene encodes a protein that is necessary for motile cilia function. It functions in correct left-right axis formation by regulating the assembly of the inner dynein arm and the dynein regulatory complexes, which control ciliary beat. Mutations in thi
SNPs SNP information provided by dbSNP.
30
SNP ID Visualize variation Clinical significance Consequence
rs138001923 A>G Conflicting-interpretations-of-pathogenicity Genic upstream transcript variant, intron variant
rs200958035 G>A,C Conflicting-interpretations-of-pathogenicity Non coding transcript variant, genic downstream transcript variant, coding sequence variant, missense variant
rs369089505 C>T Conflicting-interpretations-of-pathogenicity Non coding transcript variant, synonymous variant, genic upstream transcript variant, coding sequence variant
rs370706991 G>A,T Likely-pathogenic, pathogenic Genic downstream transcript variant, splice acceptor variant
rs371595543 A>T Pathogenic, uncertain-significance Non coding transcript variant, stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
8
miRTarBase ID miRNA Experiments Reference
MIRT868886 hsa-miR-3168 CLIP-seq
MIRT868887 hsa-miR-3649 CLIP-seq
MIRT868888 hsa-miR-4263 CLIP-seq
MIRT868889 hsa-miR-4324 CLIP-seq
MIRT868890 hsa-miR-4475 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
37
GO ID Ontology Definition Evidence Reference
GO:0001947 Process Heart looping IBA
GO:0001947 Process Heart looping IMP 22693285
GO:0003341 Process Cilium movement IEA
GO:0003341 Process Cilium movement IMP 22499950
GO:0003351 Process Epithelial cilium movement involved in extracellular fluid movement IMP 21131974
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
613799 26090 ENSG00000141519
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q4G0X9
Protein name Coiled-coil domain-containing protein 40
Protein function Required for assembly of dynein regulatory complex (DRC) and inner dynein arm (IDA) complexes, which are responsible for ciliary beat regulation, thereby playing a central role in motility in cilia and flagella (PubMed:21131974). Probably acts t
PDB 8J07
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF08647 BRE1 780 878 Family
Sequence
MAEPGGAAGRSHPEDGSASEGEKEGNNESHMVSPPEKDDGQKGEEAVGSTEHPEEVTTQA
EAAIEEGEVETEGEAAVEGEEEAVSYGDAESEEEYYYTETSSPEGQISAADTTYPYFSPP
QELPGEEAYDSVSGEAGLQGFQQEATGPPESRERRVTSPEPSHGVLGPSEQMGQVTSGPA
VGRLTGSTEEPQGQVLPMGVQHRFRLSHGSDIESSDLEEFVSQEPVIPPGVPDAHPREGD
LPVFQDQIQQPSTEEGAMAERVESEGSDEEAEDEGSQLVVLDPDHPLMVRFQAALKNYLN
RQIEKLKLDLQELVVATKQSRAQRQELGVNLYEVQQHLVHLQKLLEKSHDRHAMASSERR
QKEEELQAARALYTKTCAAANEERKKLAALQTEMENLALHLFYMQNIDQDMRDDIRVMTQ
VVKKAETERIRAEIEKKKQDLYVDQLTTRAQQLEEDIALFEAQYLAQAEDTRILRKAVSE
ACTEIDAISVEKRRIMQQWASSLVGMKHRDEAHRAVLEALRGCQHQAKSTDGEIEAYKKS
IMKEEEKNEKLASILNRTETEATLLQKLTTQCLTKQVALQSQFNTYRLTLQDTEDALSQD
QLEQMILTEELQAIRQAIQGELELRRKTDAAIREKLQEHMTSNKTTKYFNQLILRLQKEK
TNMMTHLSKINGDIAQTTLDITHTSSRLDAHQKTLVELDQDVKKVNELITNSQSEISRRT
ILIERKQGLINFLNKQLERMVSELGGEEVGPLELEIKRLSKLIDEHDGKAVQAQVTWLRL
QQEMVKVTQEQEEQLASLDASKKELHIMEQKKLRVESKIEQEKKEQKEIEHHMKDLDNDL
KKLNMLMNKNRCSSEELEQNNRVTENEFVRSLKASERE
TIKMQDKLNQLSEEKATLLNQL
VEAEHQIMLWEKKIQLAKEMRSSVDSEIGQTEIRAMKGEIHRMKVRLGQLLKQQEKMIRA
MELAVARRETVTTQAEGQRKMDRKALTRTDFHHKQLELRRKIRDVRKATDECTKTVLELE
ETQRNVSSSLLEKQEKLSVIQADFDTLEADLTRLGALKRQNLSEIVALQTRLKHLQAVKE
GRYVFLFRSKQSLVLERQRLDKRLALIATILDRVRDEYPQFQEALHKVSQMIANKLESPG
PS
Sequence length 1142
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
41
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
CCDC40-related disorder Likely pathogenic; Pathogenic rs2510320263, rs397515393, rs370706991, rs371595543 RCV003391422
RCV004754277
RCV003902644
RCV004754462
RCV003965446
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Combined immunodeficiency due to DOCK8 deficiency Pathogenic rs747233125 RCV003448338
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Heterotaxy Pathogenic rs1363364769 RCV001732150
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Kartagener syndrome Pathogenic rs587778819, rs745993158 RCV000578183
RCV000578202
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AUTISM SPECTRUM DISORDER CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTISM SPECTRUM DISORDERS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOIMMUNE DISEASE GenCC
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOIMMUNE DISEASES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Asthenozoospermia Asthenozoospermia HPO_DG
★☆☆☆☆
Found in Text Mining only
Asthma Asthma HPO_DG
★☆☆☆☆
Found in Text Mining only
Bronchiectasis Bronchiectasis GENOMICS_ENGLAND_DG
★☆☆☆☆
Found in Text Mining only
Bronchiectasis Bronchiectasis HPO_DG
★☆☆☆☆
Found in Text Mining only
Bronchitis, Chronic Gastric Cancer HPO_DG
★☆☆☆☆
Found in Text Mining only
Chronic otitis media Otitis media HPO_DG
★☆☆☆☆
Found in Text Mining only
Chronic sinusitis Sinusitis HPO_DG
★☆☆☆☆
Found in Text Mining only
Ciliary Dyskinesia, Primary, 1, With Or Without Situs Inversus Ciliary Dyskinesia CTD_human_DG 21131974
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Ciliary Dyskinesia, Primary, 1, With Or Without Situs Inversus Ciliary Dyskinesia CLINVAR_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CILIARY DYSKINESIA, PRIMARY, 14 Ciliary dyskinesia GENOMICS_ENGLAND_DG
★☆☆☆☆
Found in Text Mining only