Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	54830
Gene name	Nucleoporin 62 C-terminal like
Gene symbol	NUP62CL
Synonyms (NCBI Gene)	-
Chromosome	X
Chromosome location	Xq22.3
Summary	This gene encodes a protein containing a domain found in nucleoporins which are glycoproteins found in nuclear pore complexes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2011]

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miRTarBase ID	miRNA	Experiments	Reference
MIRT018851	hsa-miR-335-5p	Microarray	18185580
MIRT1199822	hsa-miR-101	CLIP-seq
MIRT1199823	hsa-miR-1224-5p	CLIP-seq
MIRT1199824	hsa-miR-1231	CLIP-seq
MIRT1199825	hsa-miR-1238	CLIP-seq
MIRT1199826	hsa-miR-1253	CLIP-seq
MIRT1199827	hsa-miR-1271	CLIP-seq
MIRT1199828	hsa-miR-1304	CLIP-seq
MIRT1199829	hsa-miR-144	CLIP-seq
MIRT1199830	hsa-miR-147	CLIP-seq
MIRT1199831	hsa-miR-182	CLIP-seq
MIRT1199832	hsa-miR-216b	CLIP-seq
MIRT1199833	hsa-miR-3120-5p	CLIP-seq
MIRT1199834	hsa-miR-3121-5p	CLIP-seq
MIRT1199835	hsa-miR-3150b-3p	CLIP-seq
MIRT1199836	hsa-miR-3166	CLIP-seq
MIRT1199837	hsa-miR-3194-3p	CLIP-seq
MIRT1199838	hsa-miR-3617	CLIP-seq
MIRT1199839	hsa-miR-3620	CLIP-seq
MIRT1199840	hsa-miR-3675-3p	CLIP-seq
MIRT1199841	hsa-miR-378	CLIP-seq
MIRT1199842	hsa-miR-378b	CLIP-seq
MIRT1199843	hsa-miR-378c	CLIP-seq
MIRT1199844	hsa-miR-378d	CLIP-seq
MIRT1199845	hsa-miR-378e	CLIP-seq
MIRT1199846	hsa-miR-378f	CLIP-seq
MIRT1199847	hsa-miR-378h	CLIP-seq
MIRT1199848	hsa-miR-378i	CLIP-seq
MIRT1199849	hsa-miR-3913-3p	CLIP-seq
MIRT1199850	hsa-miR-3915	CLIP-seq
MIRT1199851	hsa-miR-3976	CLIP-seq
MIRT1199852	hsa-miR-422a	CLIP-seq
MIRT1199853	hsa-miR-4268	CLIP-seq
MIRT1199854	hsa-miR-4270	CLIP-seq
MIRT1199855	hsa-miR-4272	CLIP-seq
MIRT1199856	hsa-miR-4289	CLIP-seq
MIRT1199857	hsa-miR-4310	CLIP-seq
MIRT1199858	hsa-miR-4427	CLIP-seq
MIRT1199859	hsa-miR-4434	CLIP-seq
MIRT1199860	hsa-miR-4441	CLIP-seq
MIRT1199861	hsa-miR-4448	CLIP-seq
MIRT1199862	hsa-miR-4477a	CLIP-seq
MIRT1199863	hsa-miR-4489	CLIP-seq
MIRT1199864	hsa-miR-4516	CLIP-seq
MIRT1199865	hsa-miR-4638-3p	CLIP-seq
MIRT1199866	hsa-miR-4680-3p	CLIP-seq
MIRT1199867	hsa-miR-4689	CLIP-seq
MIRT1199868	hsa-miR-4691-5p	CLIP-seq
MIRT1199869	hsa-miR-4724-3p	CLIP-seq
MIRT1199870	hsa-miR-4755-3p	CLIP-seq
MIRT1199871	hsa-miR-4784	CLIP-seq
MIRT1199872	hsa-miR-489	CLIP-seq
MIRT1199873	hsa-miR-499-3p	CLIP-seq
MIRT1199874	hsa-miR-499a-3p	CLIP-seq
MIRT1199875	hsa-miR-500a	CLIP-seq
MIRT1199876	hsa-miR-582-5p	CLIP-seq
MIRT1199877	hsa-miR-603	CLIP-seq
MIRT1199878	hsa-miR-626	CLIP-seq
MIRT1199879	hsa-miR-641	CLIP-seq
MIRT1199880	hsa-miR-96	CLIP-seq
MIRT2286234	hsa-miR-4418	CLIP-seq
MIRT2286235	hsa-miR-4494	CLIP-seq
MIRT2286236	hsa-miR-4768-3p	CLIP-seq
MIRT2286237	hsa-miR-4786-5p	CLIP-seq
MIRT2286238	hsa-miR-494	CLIP-seq
MIRT2286239	hsa-miR-509-3-5p	CLIP-seq
MIRT2286240	hsa-miR-509-5p	CLIP-seq

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GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	16189514, 25416956, 26871637, 31515488, 32296183, 33961781
GO:0005635	Component	Nuclear envelope	IEA
GO:0005643	Component	Nuclear pore	IEA
GO:0006913	Process	Nucleocytoplasmic transport	IEA
GO:0015031	Process	Protein transport	IEA
GO:0017056	Function	Structural constituent of nuclear pore	IEA

MIM	HGNC	e!Ensembl
HGNC	N/A	HGNC

Q9H1M0

Protein name

Nucleoporin-62 C-terminal-like protein

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF05064	Nsp1_C	57 → 173	Nsp1-like C-terminal region	Family

Sequence

MQFTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPY
TSTVSVVATPVMTYGHLEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGEMIRILH
GEVNKVKLDQKRLEQELDFILSQQQELEFLLTYLEESTRDQSGLHYLQDADEEHVEISTR
SAEF

Sequence length

184

Interactions

View interactions

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Show/Hide Unknown Diseases (1)

Phenotype Name	Clinical Significance	Source	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
PANCREATITIS	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

NUP62CL (nucleoporin 62 C-terminal like)