Gene Gene information from NCBI Gene database.
Entrez ID 54808
Gene name Dymeclin
Gene symbol DYM
Synonyms (NCBI Gene)
DMCSMC
Chromosome 18
Chromosome location 18q21.1
Summary This gene encodes a protein which regulates Golgi-associated secretory pathways that are essential to endochondral bone formation during early development. This gene is also believed to play a role in early brain development. This gene is widely expressed
SNPs SNP information provided by dbSNP.
22
SNP ID Visualize variation Clinical significance Consequence
rs120074161 G>A,C Pathogenic Synonymous variant, stop gained, coding sequence variant, non coding transcript variant, 5 prime UTR variant
rs120074162 A>G,T Pathogenic Intron variant, synonymous variant, stop gained, coding sequence variant, non coding transcript variant
rs120074163 T>A Pathogenic Missense variant, non coding transcript variant, coding sequence variant
rs120074165 A>G Pathogenic Intron variant, coding sequence variant, missense variant, non coding transcript variant, genic downstream transcript variant
rs146000214 T>C,G Uncertain-significance, conflicting-interpretations-of-pathogenicity Intron variant, coding sequence variant, missense variant, non coding transcript variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
37
miRTarBase ID miRNA Experiments Reference
MIRT036569 hsa-miR-941 CLASH 23622248
MIRT668654 hsa-miR-3127-3p HITS-CLIP 23824327
MIRT668653 hsa-miR-6756-3p HITS-CLIP 23824327
MIRT668652 hsa-miR-6832-3p HITS-CLIP 23824327
MIRT668651 hsa-miR-223-5p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
11
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 21280149
GO:0005737 Component Cytoplasm IDA 21280149
GO:0005737 Component Cytoplasm IEA
GO:0005794 Component Golgi apparatus IBA
GO:0005794 Component Golgi apparatus IDA 21280149
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607461 21317 ENSG00000141627
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q7RTS9
Protein name Dymeclin (Dyggve-Melchior-Clausen syndrome protein)
Protein function Necessary for correct organization of Golgi apparatus. Involved in bone development.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF09742 Dymeclin 1 646 Family
Tissue specificity TISSUE SPECIFICITY: Expressed in most embryo-fetal and adult tissues. Abundant in primary chondrocytes, osteoblasts, cerebellum, kidney, lung, stomach, heart, pancreas and fetal brain. Very low or no expression in the spleen, thymus, esophagus, bladder an
Sequence
Sequence length 669
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
20
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Dyggve-Melchior-Clausen syndrome Pathogenic; Likely pathogenic rs767767037, rs2087482291, rs2087496511, rs2087498329, rs2095000244, rs2063332964, rs2148459355, rs2074694091, rs2147362866, rs2517730377, rs120074161, rs1568264929, rs120074162, rs120074163, rs1568119124
View all (14 more)
RCV001328005
RCV001352909
RCV001352908
RCV001352905
RCV001352911
View all (24 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
DYM-related disorder Pathogenic; Likely pathogenic rs120074164, rs567638775 RCV004758589
RCV004035398
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Smith-McCort dysplasia 1 Likely pathogenic; Pathogenic rs120074162, rs120074164, rs120074165, rs775414124 RCV002482820
RCV000003340
RCV000003344
RCV000003338
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL ANOMALY OF CARTILAGE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONNECTIVE TISSUE DISEASES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Connective tissue disorder Uncertain significance; Conflicting classifications of pathogenicity; Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Anaplasia Anaplasia BEFREE 16151017, 31346526
★☆☆☆☆
Found in Text Mining only
Angelman Syndrome Angelman Syndrome BEFREE 12757356
★☆☆☆☆
Found in Text Mining only
Aortic Aneurysm, Abdominal Aortic Aneurysm BEFREE 31440377
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 27470516, 29562638, 29875324
★☆☆☆☆
Found in Text Mining only
Asthma Asthma BEFREE 19690384, 31440377
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis BEFREE 27470516, 29562638, 29875324
★☆☆☆☆
Found in Text Mining only
Atlantoaxial instability Atlantoaxial abnormality HPO_DG
★☆☆☆☆
Found in Text Mining only
Attention deficit hyperactivity disorder Attention Deficit Hyperactivity Disorder HPO_DG
★☆☆☆☆
Found in Text Mining only
AURAL ATRESIA, CONGENITAL Aural Atresia, Congenital BEFREE 16783171
★☆☆☆☆
Found in Text Mining only
Autistic Disorder Autism HPO_DG
★☆☆☆☆
Found in Text Mining only