Gene Gene information from NCBI Gene database.
Entrez ID 54795
Gene name Transient receptor potential cation channel subfamily M member 4
Gene symbol TRPM4
Synonyms (NCBI Gene)
EKVP6LTrpC4PFHB1BTRPM4BhTRPM4
Chromosome 19
Chromosome location 19q13.33
Summary The protein encoded by this gene is a calcium-activated nonselective ion channel that mediates transport of monovalent cations across membranes, thereby depolarizing the membrane. The activity of the encoded protein increases with increasing intracellular
SNPs SNP information provided by dbSNP.
15
SNP ID Visualize variation Clinical significance Consequence
rs71352737 G>A Benign, likely-pathogenic Intron variant, coding sequence variant, stop gained
rs140799936 A>G,T Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, stop gained, coding sequence variant
rs141531245 C>A,T Uncertain-significance, conflicting-interpretations-of-pathogenicity Missense variant, 5 prime UTR variant, coding sequence variant, synonymous variant, intron variant
rs144781529 A>G Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, genic upstream transcript variant, coding sequence variant, upstream transcript variant, intron variant
rs145501662 C>T Conflicting-interpretations-of-pathogenicity Missense variant, 5 prime UTR variant, genic upstream transcript variant, coding sequence variant, upstream transcript variant, intron variant
miRNA miRNA information provided by mirtarbase database.
37
miRTarBase ID miRNA Experiments Reference
MIRT017409 hsa-miR-335-5p Microarray 18185580
MIRT023660 hsa-miR-1-3p Microarray 18668037
MIRT1457324 hsa-miR-3616-5p CLIP-seq
MIRT1457325 hsa-miR-3647-5p CLIP-seq
MIRT1457326 hsa-miR-4279 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
66
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0002250 Process Adaptive immune response IEA
GO:0002376 Process Immune system process IEA
GO:0002407 Process Dendritic cell chemotaxis IEA
GO:0002407 Process Dendritic cell chemotaxis ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606936 17993 ENSG00000130529
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8TD43
Protein name Transient receptor potential cation channel subfamily M member 4 (hTRPM4) (Calcium-activated non-selective cation channel 1) (Long transient receptor potential channel 4) (LTrpC-4) (LTrpC4) (Melastatin-4)
Protein function Calcium-activated selective cation channel that mediates membrane depolarization (PubMed:12015988, PubMed:12842017, PubMed:29211723, PubMed:30528822). While it is activated by increase in intracellular Ca(2+), it is impermeable to it (PubMed:120
PDB 5WP6 , 6BQR , 6BQV , 6BWI , 8RCR , 8RCU , 8RD9 , 9B8W , 9B8X , 9B8Y , 9B8Z , 9B90 , 9B91 , 9B92 , 9B93 , 9B94
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18139 LSDAT_euk 88 355 SLOG in TRPM Family
PF00520 Ion_trans 786 1055 Ion transport protein Family
Tissue specificity TISSUE SPECIFICITY: Widely expressed with a high expression in intestine and prostate. In brain, it is both expressed in whole cerebral arteries and isolated vascular smooth muscle cells. Prominently expressed in Purkinje fibers. Expressed at higher level
Sequence
MVVPEKEQSWIPKIFKKKTCTTFIVDSTDPGGTLCQCGRPRTAHPAVAMEDAFGAAVVTV
WDSDAHTTEKPTDAYGELDFTGAGRKHSNFLRLSDRTDPAAVYSLVTRTWGFRAPNLVVS
VLGGSGGPVLQTWLQDLLRRGLVRAAQSTGAWIVTGGLHTGIGRHVGVAVRDHQMASTGG
TKVVAMGVAPWGVVRNRDTLINPKGSFPARYRWRGDPEDGVQFPLDYNYSAFFLVDDGTH
GCLGGENRFRLRLESYISQQKTGVGGTGIDIPVLLLLIDGDEKMLTRIENATQAQLPCLL
VAGSGGAADCLAETLEDTLAPGSGGARQGEARDRIRRFFPKGDLEVLQAQVERIM
TRKEL
LTVYSSEDGSEEFETIVLKALVKACGSSEASAYLDELRLAVAWNRVDIAQSELFRGDIQW
RSFHLEASLMDALLNDRPEFVRLLISHGLSLGHFLTPMRLAQLYSAAPSNSLIRNLLDQA
SHSAGTKAPALKGGAAELRPPDVGHVLRMLLGKMCAPRYPSGGAWDPHPGQGFGESMYLL
SDKATSPLSLDAGLGQAPWSDLLLWALLLNRAQMAMYFWEMGSNAVSSALGACLLLRVMA
RLEPDAEEAARRKDLAFKFEGMGVDLFGECYRSSEVRAARLLLRRCPLWGDATCLQLAMQ
ADARAFFAQDGVQSLLTQKWWGDMASTTPIWALVLAFFCPPLIYTRLITFRKSEEEPTRE
ELEFDMDSVINGEGPVGTADPAEKTPLGVPRQSGRPGCCGGRCGGRRCLRRWFHFWGAPV
TIFMGNVVSYLLFLLLFSRVLLVDFQPAPPGSLELLLYFWAFTLLCEELRQGLSGGGGSL
ASGGPGPGHASLSQRLRLYLADSWNQCDLVALTCFLLGVGCRLTPGLYHLGRTVLCIDFM
VFTVRLLHIFTVNKQLGPKIVIVSKMMKDVFFFLFFLGVWLVAYGVATEGLLRPRDSDFP
SILRRVFYRPYLQIFGQIPQEDMDVALMEHSNCSSEPGFWAHPPGAQAGTCVSQYANWLV
VLLLVIFLLVANILLVNLLIAMFSYTFGKVQGNSD
LYWKAQRYRLIREFHSRPALAPPFI
VISHLRLLLRQLCRRPRSPQPSSPALEHFRVYLSKEAERKLLTWESVHKENFLLARARDK
RESDSERLKRTSQKVDLALKQLGHIREYEQRLKVLEREVQQCSRVLGWVAEALSRSALLP
PGGPPPPDLPGSKD
Sequence length 1214
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Insulin secretion   TRP channels
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
50
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Cardiovascular phenotype Likely pathogenic; Pathogenic rs2122839457 RCV003303498
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Erythrokeratodermia variabilis et progressiva 6 Likely pathogenic; Pathogenic rs1369949906, rs1278993777 RCV000808167
RCV000808168
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Progressive familial heart block type IB Likely pathogenic; Pathogenic rs2122839457, rs267607142, rs172151858, rs1369949906 RCV001950888
RCV000003968
RCV000029162
RCV001386316
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
TRPM4-related disorder Likely pathogenic rs267607142 RCV004532279
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ALZHEIMER DISEASE GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Arrhythmogenic right ventricular cardiomyopathy Benign; Likely benign; Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ARRHYTHMOGENIC RIGHT VENTRICULAR DYSPLASIA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Andersen Syndrome Andersen-tawil syndrome Pubtator 28315637 Associate
★☆☆☆☆
Found in Text Mining only
Arrhythmias Cardiac Cardiac arrhythmias Pubtator 35500522, 38467355 Associate
★☆☆☆☆
Found in Text Mining only
Arrhythmogenic Right Ventricular Dysplasia Arrhythmogenic right ventricular cardiomyopathy Pubtator 33922380 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Atrial Fibrillation Atrial fibrillation Pubtator 28839241 Stimulate
★☆☆☆☆
Found in Text Mining only
Atrioventricular Block Atrioventricular block BEFREE 27207958
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Atrioventricular Block Atrioventricular block Pubtator 27207958, 33959666, 35205305, 36352534 Associate
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Atrioventricular Block Atrioventricular block HPO_DG
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Autoimmune Diseases of the Nervous System Autoimmune nervous system disorder Pubtator 39546944 Associate
★☆☆☆☆
Found in Text Mining only
B-Cell Lymphomas B-Cell Lymphoma BEFREE 30980865
★☆☆☆☆
Found in Text Mining only
Brain Edema Brain edema Pubtator 30484364, 35474489, 39189437 Associate
★☆☆☆☆
Found in Text Mining only