Gene Gene information from NCBI Gene database.
Entrez ID 54585
Gene name Leucine zipper transcription factor like 1
Gene symbol LZTFL1
Synonyms (NCBI Gene)
BBS17
Chromosome 3
Chromosome location 3p21.31
Summary This gene encodes a ubiquitously expressed protein that localizes to the cytoplasm. This protein interacts with Bardet-Biedl Syndrome (BBS) proteins and, through its interaction with BBS protein complexes, regulates protein trafficking to the ciliary memb
SNPs SNP information provided by dbSNP.
5
SNP ID Visualize variation Clinical significance Consequence
rs431825171 CTTTG>- Pathogenic Non coding transcript variant, coding sequence variant, frameshift variant
rs515726135 A>G Pathogenic Missense variant, non coding transcript variant, coding sequence variant
rs769327864 G>A Pathogenic Coding sequence variant, non coding transcript variant, stop gained
rs1354476372 C>T Likely-pathogenic Genic upstream transcript variant, missense variant, initiator codon variant, 5 prime UTR variant
rs1553612629 C>A Likely-pathogenic Non coding transcript variant, stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
212
miRTarBase ID miRNA Experiments Reference
MIRT002741 hsa-miR-1-3p Microarray 15685193
MIRT017804 hsa-miR-335-5p Microarray 18185580
MIRT002741 hsa-miR-1-3p Microarray;Other 15685193
MIRT755573 miR-155 qRT-PCR 35992785
MIRT1124384 hsa-miR-1237 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
16
GO ID Ontology Definition Evidence Reference
GO:0002177 Component Manchette IEA
GO:0005515 Function Protein binding IPI 22072986, 25416956, 27173435, 28514442, 31515488, 32296183, 33961781
GO:0005737 Component Cytoplasm IBA
GO:0005737 Component Cytoplasm IEA
GO:0005829 Component Cytosol IDA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606568 6741 ENSG00000163818
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9NQ48
Protein name Leucine zipper transcription factor-like protein 1
Protein function Regulates ciliary localization of the BBSome complex. Together with the BBSome complex, controls SMO ciliary trafficking and contributes to the sonic hedgehog (SHH) pathway regulation. May play a role in neurite outgrowth. May have tumor suppres
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15294 Leu_zip 20 294 Leucine zipper Family
Tissue specificity TISSUE SPECIFICITY: Expressed in prostate, ovary, stomach, pancreas, esophagus, breast, liver, bladder, kidney, thyroid, colon and lung (at protein level). Down-regulated in multiple primary tumors (at protein level). Detected in testis, heart, skeletal m
Sequence
Sequence length 299
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    BBSome-mediated cargo-targeting to cilium
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
12
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Bardet-Biedl syndrome Pathogenic rs2529777952 RCV003222535
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Bardet-Biedl syndrome 1 Pathogenic rs515726135, rs515726136 RCV000114319
RCV000114320
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Bardet-Biedl syndrome 17 Pathogenic; Likely pathogenic rs515726135, rs515726136, rs2125680264, rs1374806070, rs2529764469, rs431825171, rs1354476372 RCV000133552
RCV000133553
RCV001807914
RCV003315150
RCV004527271
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
LZTFL1-related disorder Likely pathogenic rs1354476372 RCV004749586
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CILIOPATHIES Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CRITICAL ILLNESS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Hirschsprung disease, susceptibility to, 1 Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
MULTIPLE SCLEROSIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Bardet-Biedl Syndrome Bardet-Biedl Syndrome BEFREE 22510444, 23692385, 30423168, 31293455
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Bardet-Biedl Syndrome Bardet-Biedl Syndrome ORPHANET_DG 22510444
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Bardet-Biedl syndrome Bardet-Biedl Syndrome Orphanet
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Bardet-Biedl Syndrome Bardet-Biedl Syndrome CLINVAR_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
BARDET-BIEDL SYNDROME 17 Bardet-Biedl Syndrome UNIPROT_DG 22510444, 23692385
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
BARDET-BIEDL SYNDROME 17 Bardet-Biedl Syndrome GENOMICS_ENGLAND_DG 22510444, 23692385, 27312011
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
BARDET-BIEDL SYNDROME 17 Bardet-Biedl Syndrome CTD_human_DG
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
BARDET-BIEDL SYNDROME 17 Bardet-Biedl Syndrome CLINVAR_DG
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Brachydactyly Brachydactyly HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 31351450
★☆☆☆☆
Found in Text Mining only