Gene Gene information from NCBI Gene database.
Entrez ID 54583
Gene name Egl-9 family hypoxia inducible factor 1
Gene symbol EGLN1
Synonyms (NCBI Gene)
C1orf12ECYT3HALAHHIF-PH2HIFPH2HPH-2HPH2PHD2SM20ZMYND6
Chromosome 1
Chromosome location 1q42.2
Summary The protein encoded by this gene catalyzes the post-translational formation of 4-hydroxyproline in hypoxia-inducible factor (HIF) alpha proteins. HIF is a transcriptional complex that plays a central role in mammalian oxygen homeostasis. This protein func
SNPs SNP information provided by dbSNP.
6
SNP ID Visualize variation Clinical significance Consequence
rs12097901 C>G Affects, benign Missense variant, coding sequence variant
rs80358193 G>C Pathogenic Missense variant, coding sequence variant
rs119476044 C>T Pathogenic Missense variant, intron variant, coding sequence variant
rs119476045 T>C Pathogenic Missense variant, intron variant, coding sequence variant
rs186996510 G>C Affects, benign, likely-benign Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
328
miRTarBase ID miRNA Experiments Reference
MIRT016815 hsa-miR-335-5p Microarray 18185580
MIRT038498 hsa-miR-296-3p CLASH 23622248
MIRT544371 hsa-miR-548n PAR-CLIP 21572407
MIRT544370 hsa-miR-548az-5p PAR-CLIP 21572407
MIRT544369 hsa-miR-548t-5p PAR-CLIP 21572407
Transcription factors Transcription factors information provided by TRRUST V2 database.
3
Transcription factor Regulation Reference
ETV4 Unknown 22075993
HIF1A Unknown 12839937;22075993
SIRT1 Repression 22245592
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
43
GO ID Ontology Definition Evidence Reference
GO:0001666 Process Response to hypoxia IDA 16956324
GO:0004857 Function Enzyme inhibitor activity ISS
GO:0005506 Function Iron ion binding IEA
GO:0005515 Function Protein binding IPI 15721254, 16511565, 17353276, 19208626, 20840591, 22286099, 24169621, 24681946, 25974097, 30487161
GO:0005634 Component Nucleus IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
606425 1232 ENSG00000135766
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9GZT9
Protein name Egl nine homolog 1 (EC 1.14.11.29) (Hypoxia-inducible factor prolyl hydroxylase 2) (HIF-PH2) (HIF-prolyl hydroxylase 2) (HPH-2) (Prolyl hydroxylase domain-containing protein 2) (PHD2) (SM-20)
Protein function Cellular oxygen sensor that catalyzes, under normoxic conditions, the post-translational formation of 4-hydroxyproline in hypoxia-inducible factor (HIF) alpha proteins. Hydroxylates a specific proline found in each of the oxygen-dependent degrad
PDB 2G19 , 2G1M , 2HBT , 2HBU , 2Y33 , 2Y34 , 3HQR , 3HQU , 3OUH , 3OUI , 3OUJ , 4BQW , 4BQX , 4BQY , 4JZR , 4KBZ , 4UWD , 5A3U , 5L9B , 5L9R , 5L9V , 5LA9 , 5LAS , 5LAT , 5LB6 , 5LBB , 5LBC , 5LBE , 5LBF , 5OX5 , 5OX6 , 5V18 , 6NMQ , 6QGV , 6ST3 , 6YVT , 6YVW , 6YVX , 6YVZ , 6YW0 , 6YW1 , 6YW2 , 6YW3 , 6YW4 , 6ZBN , 6ZBO , 7Q5V , 7Q5X , 7UJV , 7UMP , 8J1K
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01753 zf-MYND 21 58 MYND finger Domain
PF13640 2OG-FeII_Oxy_3 298 391 2OG-Fe(II) oxygenase superfamily Domain
Tissue specificity TISSUE SPECIFICITY: According to PubMed:11056053, widely expressed with highest levels in skeletal muscle and heart, moderate levels in pancreas, brain (dopaminergic neurons of adult and fetal substantia nigra) and kidney, and lower levels in lung and liv
Sequence
MANDSGGPGGPSPSERDRQYCELCGKMENLLRCSRCRSSFYCCKEHQRQDWKKHKLVCQG
SEGALGHGVGPHQHSGPAPPAAVPPPRAGAREPRKAAARRDNASGDAAKGKVKAKPPADP
AAAASPCRAAAGGQGSAVAAEAEPGKEEPPARSSLFQEKANLYPPSNTPGDALSPGGGLR
PNGQTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQL
VSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKINGRTKAMV
ACYPGNGTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKF
DRLLFFWSDRRNPHEVQPAYATRYAITVWYF
DADERARAKVKYLTGEKGVRVELNKPSDS
VGKDVF
Sequence length 426
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  HIF-1 signaling pathway
Pathways in cancer
Renal cell carcinoma
  Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
8
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Erythrocytosis, familial, 3 Pathogenic rs2102898170, rs119476044, rs119476045, rs1656591590, rs2527358629, rs1018129986 RCV001353370
RCV000004604
RCV000004605
RCV003611054
RCV003612116
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AUTOSOMAL DOMINANT SECONDARY POLYCYTHEMIA Disgenet, GWAS catalog, Orphanet
Disgenet, GWAS catalog, Orphanet
Disgenet, GWAS catalog, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CUTANEOUS MASTOCYTOSIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
EGLN1-related disorder Likely benign; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
ABLEPHARON-MACROSTOMIA SYNDROME Ablepharon macrostomia syndrome BEFREE 22595196, 25431923, 30278484
★☆☆☆☆
Found in Text Mining only
Acute Undifferentiated Leukemia Leukemia BEFREE 25248926
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 30575913
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma GENOMICS_ENGLAND_DG 17579185
★☆☆☆☆
Found in Text Mining only
Adrenal Gland Pheochromocytoma Adrenal Gland Pheochromocytoma BEFREE 20959442, 21115163, 23061808, 23418310, 25263965
★☆☆☆☆
Found in Text Mining only
Anemia Anemia BEFREE 20973793, 23264599, 28625716
★☆☆☆☆
Found in Text Mining only
Anemia Anemia Pubtator 20973793 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis BEFREE 22488178
★☆☆☆☆
Found in Text Mining only
Arthritis Arthritis Pubtator 22488178 Associate
★☆☆☆☆
Found in Text Mining only
Arthritis Psoriatic Psoriatic arthritis Pubtator 22488178 Associate
★☆☆☆☆
Found in Text Mining only