Gene Gene information from NCBI Gene database.
Entrez ID 54567
Gene name Delta like canonical Notch ligand 4
Gene symbol DLL4
Synonyms (NCBI Gene)
AOS6delta4hdelta2
Chromosome 15
Chromosome location 15q15.1
Summary This gene is a homolog of the Drosophila delta gene. The delta gene family encodes Notch ligands that are characterized by a DSL domain, EGF repeats, and a transmembrane domain. [provided by RefSeq, Jul 2008]
SNPs SNP information provided by dbSNP.
15
SNP ID Visualize variation Clinical significance Consequence
rs61750844 C>T Pathogenic Stop gained, coding sequence variant
rs796065344 C>T Pathogenic Coding sequence variant, stop gained
rs796065345 C>G,T Pathogenic Synonymous variant, coding sequence variant, missense variant
rs796065346 G>A Pathogenic Coding sequence variant, missense variant
rs796065347 T>C Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
32
miRTarBase ID miRNA Experiments Reference
MIRT054328 hsa-miR-30b-5p In situ hybridizationLuciferase reporter assayqRT-PCRWestern blot 23086751
MIRT054329 hsa-miR-30c-5p In situ hybridizationLuciferase reporter assayqRT-PCRWestern blot 23086751
MIRT491290 hsa-miR-3943 PAR-CLIP 23592263
MIRT491289 hsa-miR-345-3p PAR-CLIP 23592263
MIRT491288 hsa-miR-1203 PAR-CLIP 23592263
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
SIRT1 Repression 20631301
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
69
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II ISS
GO:0001525 Process Angiogenesis IEA
GO:0001525 Process Angiogenesis IEA
GO:0001525 Process Angiogenesis ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
605185 2910 ENSG00000128917
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9NR61
Protein name Delta-like protein 4 (Drosophila Delta homolog 4) (Delta4)
Protein function Involved in the Notch signaling pathway as Notch ligand (PubMed:11134954). Activates NOTCH1 and NOTCH4. Involved in angiogenesis; negatively regulates endothelial cell proliferation and migration and angiogenic sprouting (PubMed:20616313). Essen
PDB 5MVX
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07657 MNNL 27 89 N terminus of Notch ligand Family
PF01414 DSL 155 217 Delta serrate ligand Domain
PF00008 EGF 281 320 EGF-like domain Domain
PF00008 EGF 328 358 EGF-like domain Domain
PF00008 EGF 366 398 EGF-like domain Domain
PF12661 hEGF 411 432 Human growth factor-like EGF Domain
PF00008 EGF 444 474 EGF-like domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in vascular endothelium.
Sequence
MAAASRSASGWALLLLVALWQQRAAGSGVFQLQLQEFINERGVLASGRPCEPGCRTFFRV
CLKHFQAVVSPGPCTFGTVSTPVLGTNSF
AVRDDSSGGGRNPLQLPFNFTWPGTFSLIIE
AWHAPGDDLRPEALPPDALISKIAIQGSLAVGQNWLLDEQTSTLTRLRYSYRVICSDNYY
GDNCSRLCKKRNDHFGHYVCQPDGNLSCLPGWTGEYC
QQPICLSGCHEQNGYCSKPAECL
CRPGWQGRLCNECIPHNGCRHGTCSTPWQCTCDEGWGGLFCDQDLNYCTHHSPCKNGATC
SNSGQRSYTCTCRPGYTGVD
CELELSECDSNPCRNGGSCKDQEDGYHCLCPPGYYGLHCE
HSTLSCADSPCFNGGSCRERNQGANYACECPPNFTGSNCEKKVDRCTSNPCANGGQCLNR
GPSRMCRCRPGF
TGTYCELHVSDCARNPCAHGGTCHDLENGLMCTCPAGFSGRRCEVRTS
IDACASSPCFNRATCYTDLSTDTFVCNCPYGFVGSRCEFPVGLPPSFPWVAVSLGVGLAV
LLVLLGMVAVAVRQLRLRRPDDGSREAMNNLSDFQKDNLIPAAQLKNTNQKKELEVDCGL
DKSNCGKQQNHTLDYNLAPGPLGRGTMPGKFPHSDKSLGEKAPLRLHSEKPECRISAICS
PRDSMYQSVCLISEERNECVIATEV
Sequence length 685
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Endocrine resistance
Notch signaling pathway
Th1 and Th2 cell differentiation
Pathways in cancer
Chemical carcinogenesis - receptor activation
Breast cancer
  Constitutive Signaling by NOTCH1 PEST Domain Mutants
Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant
Constitutive Signaling by NOTCH1 HD Domain Mutants
Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
NOTCH2 Activation and Transmission of Signal to the Nucleus
NOTCH3 Activation and Transmission of Signal to the Nucleus
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
13
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Adams-Oliver syndrome Pathogenic; Likely pathogenic rs796065350, rs796065348, rs796065351, rs796065347, rs796065346, rs796065345, rs796065344, rs61750844 RCV000190441
RCV000190439
RCV000190442
RCV000190438
RCV000190437
View all (3 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Adams-Oliver syndrome 6 Likely pathogenic; Pathogenic rs2140369593, rs796065350, rs796065348, rs796065347, rs796065346, rs796065344, rs61750844, rs2542549210, rs2542541193, rs2542541573, rs1555393027, rs1555393125, rs1247027543, rs1555393182, rs1596194950
View all (2 more)
RCV001775302
RCV000195289
RCV000195285
RCV000195284
RCV000195288
View all (12 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
DLL4-related disorder Pathogenic; Likely pathogenic rs796065348, rs1357715175 RCV004730899
RCV003391425
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
APLASIA CUTIS CONGENITA Disgenet, GenCC, Orphanet
Disgenet, GenCC, Orphanet
Disgenet, GenCC, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST NEOPLASMS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DESBUQUOIS SYNDROME CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acquired porencephaly Acquired Porencephaly HPO_DG
★☆☆☆☆
Found in Text Mining only
Adams Oliver syndrome Adams-Oliver Syndrome BEFREE 26299364, 28446798, 28839276, 31813956
★☆☆☆☆
Found in Text Mining only
Adams Oliver syndrome Adams-Oliver Syndrome ORPHANET_DG 26299364
★☆☆☆☆
Found in Text Mining only
Adams Oliver syndrome Adams-Oliver Syndrome CLINVAR_DG 26299364
★☆☆☆☆
Found in Text Mining only
Adams-Oliver syndrome Adams-Oliver Syndrome Orphanet
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Adams-Oliver syndrome 1 Adams-Oliver Syndrome BEFREE 26299364, 28446798, 28839276, 31813956
★☆☆☆☆
Found in Text Mining only
Adams-Oliver syndrome 1 Adams-Oliver Syndrome GENOMICS_ENGLAND_DG
★☆☆☆☆
Found in Text Mining only
Adams-Oliver syndrome 1 Adams-Oliver Syndrome CTD_human_DG
★☆☆☆☆
Found in Text Mining only
ADAMS-OLIVER SYNDROME 6 Adams-Oliver Syndrome UNIPROT_DG 26299364
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
ADAMS-OLIVER SYNDROME 6 Adams-Oliver Syndrome GENOMICS_ENGLAND_DG 26299364
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)