Gene Gene information from NCBI Gene database.
Entrez ID 538
Gene name ATPase copper transporting alpha
Gene symbol ATP7A
Synonyms (NCBI Gene)
DSMAXHMNXMKMNKSMAX3
Chromosome X
Chromosome location Xq21.1
Summary This gene encodes a transmembrane protein that functions in copper transport across membranes. This protein is localized to the trans Golgi network, where it is predicted to supply copper to copper-dependent enzymes in the secretory pathway. It relocalize
SNPs SNP information provided by dbSNP.
131
SNP ID Visualize variation Clinical significance Consequence
rs67273048 G>A Pathogenic Coding sequence variant, stop gained, intron variant
rs72554636 C>T Pathogenic Coding sequence variant, stop gained, intron variant
rs72554638 C>A,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, stop gained, intron variant, synonymous variant
rs72554639 G>C Likely-pathogenic Coding sequence variant, intron variant, missense variant
rs72554640 C>T Pathogenic Coding sequence variant, stop gained, intron variant
miRNA miRNA information provided by mirtarbase database.
401
miRTarBase ID miRNA Experiments Reference
MIRT018615 hsa-miR-335-5p Microarray 18185580
MIRT019495 hsa-miR-148b-3p Microarray 17612493
MIRT021461 hsa-miR-9-5p Microarray 17612493
MIRT023385 hsa-miR-122-5p Microarray 17612493
MIRT044676 hsa-miR-320a CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
148
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001568 Process Blood vessel development IEA
GO:0001568 Process Blood vessel development ISS
GO:0001836 Process Release of cytochrome c from mitochondria IEA
GO:0001974 Process Blood vessel remodeling IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300011 869 ENSG00000165240
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q04656
Protein name Copper-transporting ATPase 1 (EC 7.2.2.8) (Copper pump 1) (Menkes disease-associated protein)
Protein function ATP-driven copper (Cu(+)) ion pump that plays an important role in intracellular copper ion homeostasis (PubMed:10419525, PubMed:11092760, PubMed:28389643). Within a catalytic cycle, acquires Cu(+) ion from donor protein on the cytoplasmic side
PDB 1AW0 , 1KVI , 1KVJ , 1Q8L , 1S6O , 1S6U , 1Y3J , 1Y3K , 1YJR , 1YJT , 1YJU , 1YJV , 2AW0 , 2G9O , 2GA7 , 2K1R , 2KIJ , 2KMV , 2KMX , 3CJK , 5T7L , 7LU8
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00403 HMA 11 72 Heavy-metal-associated domain Domain
PF00403 HMA 174 235 Heavy-metal-associated domain Domain
PF00403 HMA 280 340 Heavy-metal-associated domain Domain
PF00403 HMA 380 441 Heavy-metal-associated domain Domain
PF00403 HMA 492 552 Heavy-metal-associated domain Domain
PF00403 HMA 567 628 Heavy-metal-associated domain Domain
PF00122 E1-E2_ATPase 814 1022 Family
PF00702 Hydrolase 1038 1313 Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed including in heart, brain, lung, muscle, kidney, pancreas, and to a lesser extent placenta (PubMed:8490646, PubMed:8490659). Expressed in fibroblasts, aortic smooth muscle cells, aortic endothelial cells and umbilical
Sequence
MDPSMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPK
TLQEAIDDMGFD
AVIHNPDPLPVLTDTLFLTVTASLTLPWDHIQSTLLKTKGVTDIKIYP
QKRTVAVTIIPSIVNANQIKELVPELSLDTGTLEKKSGACEDHSMAQAGEVVLKMKVEGM
TCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFP
AFVKK
QPKYLKLGAIDVERLKNTPVKSSEGSQQRSPSYTNDSTATFIIDGMHCKSCVSNIESTLS
ALQYVSSIVVSLENRSAIVKYNASSVTPESLRKAIEAVSP
GLYRVSITSEVESTSNSPSS
SSLQKIPLNVVSQPLTQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVE
YDPLLTSPETLRGAIEDMGFD
ATLSDTNEPLVVIAQPSSEMPLLTSTNEFYTKGMTPVQD
KEEGKNSSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPP
MIAEFIRELGFG
ATVIENADEGDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA
TNKAHIKYDPEIIGPRDIIHTIESLGFE
ASLVKKDRSASHLDHKREIRQWRRSFLVSLFF
CIPVMGLMIYMMVMDHHFATLHHNQNMSKEEMINLHSSMFLERQILPGLSVMNLLSFLLC
VPVQFFGGWYFYIQAYKALKHKTANMDVLIVLATTIAFAYSLIILLVAMYERAKVNPITF
FDTPPMLFVFIALGRWLEHIAKGKTSEALAKLISLQATEATIVTLDSDNILLSEEQVDVE
LVQRGDIIKVVPGGKFPVDGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSL
LICATHVGADTTLSQIVKLVEEAQTSKAPIQQFADKLSGYFVPFIVFVSIATLLVWIVIG
FLNFEIVETYFPGYNRSISRTETIIRFAFQASITVLCIACPCSLGLATPTAVMVGTGVGA
QN
GILIKGGEPLEMAHKVKVVVFDKTGTITHGTPVVNQVKVLTESNRISHHKILAIVGTA
ESNSEHPLGTAITKYCKQELDTETLGTCIDFQVVPGCGISCKVTNIEGLLHKNNWNIEDN
NIKNASLVQIDASNEQSSTSSSMIIDAQISNALNAQQYKVLIGNREWMIRNGLVINNDVN
DFMTEHERKGRTAVLVAVDDELCGLIAIADTVKPEAELAIHILKSMGLEVVLMTGDNSKT
ARSIASQVGITKVFAEVLPSHKVAKVKQLQEEGKRVAMVGDGINDSPALAMAN
VGIAIGT
GTDVAIEAADVVLIRNDLLDVVASIDLSRKTVKRIRINFVFALIYNLVGIPIAAGVFMPI
GLVLQPWMGSAAMAASSVSVVLSSLFLKLYRKPTYESYELPARSQIGQKSPSEISVHVGI
DDTSRNSPKLGLLDRIVNYSRASINSLLSDKRSLNSVVTSEPDKHSLLVGDFREDDDTAL
Sequence length 1500
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Platinum drug resistance
Mineral absorption
  Ion influx/efflux at host-pathogen interface
Ion transport by P-type ATPases
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
38
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
ATP7A-related disorder Likely pathogenic; Pathogenic rs2522290057, rs797045397, rs2522419324, rs2522293582, rs1557238665 RCV005869794
RCV004725044
RCV003400363
RCV003949025
RCV004742494
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Charcot-Marie-Tooth disease Pathogenic rs267606672 RCV000789728
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Cutis laxa, X-linked Likely pathogenic; Pathogenic rs2149097380, rs797045357, rs2149095968, rs797045347, rs2149083118, rs2149109587, rs2522414410, rs2522293121, rs2522414777, rs2522289608, rs2522290463, rs2522295420, rs2522350411, rs797045397, rs2522347918
View all (104 more)
RCV001775413
RCV002019219
RCV002044567
RCV002049796
RCV001898748
View all (116 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Menkes kinky-hair syndrome Pathogenic; Likely pathogenic rs2149094952, rs2149112273, rs797045357, rs2149095968, rs797045347, rs2149083118, rs2149109587, rs2149113551, rs2149083474, rs2522414410, rs2522293121, rs2522414777, rs2522289608, rs2522290463, rs2522295420
View all (177 more)
RCV001374410
RCV001805754
RCV002019219
RCV002044567
RCV002049796
View all (199 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANEMIA CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AORTIC RUPTURE CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATAXIA CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATP7A-realted disorder Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of large intestine Colorectal Cancer BEFREE 19296535
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 30842251
★☆☆☆☆
Found in Text Mining only
Adult Rickets Rickets HPO_DG
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic Lateral Sclerosis BEFREE 22210628
★☆☆☆☆
Found in Text Mining only
Amyotrophic Lateral Sclerosis Amyotrophic lateral sclerosis Pubtator 22210628, 31959876, 37849306 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia CTD_human_DG 23776592
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Aortic Aneurysm, Ruptured Aortic Aneurysm CTD_human_DG 2346371, 25449986
★☆☆☆☆
Found in Text Mining only
Aortic Rupture Aortic Rupture CTD_human_DG 2346371, 25449986
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Arteriosclerosis Arteriosclerosis BEFREE 19965596
★☆☆☆☆
Found in Text Mining only
Arthritis Rheumatoid Rheumatoid arthritis Pubtator 37547319 Associate
★☆☆☆☆
Found in Text Mining only