Gene Gene information from NCBI Gene database.
Entrez ID 5358
Gene name Plastin 3
Gene symbol PLS3
Synonyms (NCBI Gene)
BMND18DIH5T-plastin
Chromosome X
Chromosome location Xq23
Summary Plastins are a family of actin-binding proteins that are conserved throughout eukaryote evolution and expressed in most tissues of higher eukaryotes. In humans, two ubiquitous plastin isoforms (L and T) have been identified. Plastin 1 (otherwise known as
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs1135402748 A>- Pathogenic Frameshift variant, coding sequence variant
rs1603241972 C>- Likely-pathogenic Coding sequence variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
194
miRTarBase ID miRNA Experiments Reference
MIRT023553 hsa-miR-1-3p Proteomics;Microarray 18668037
MIRT024836 hsa-miR-215-5p Microarray 19074876
MIRT026136 hsa-miR-192-5p Microarray 19074876
MIRT045702 hsa-miR-125a-5p CLASH 23622248
MIRT044656 hsa-miR-320a CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
19
GO ID Ontology Definition Evidence Reference
GO:0003779 Function Actin binding IEA
GO:0005509 Function Calcium ion binding IEA
GO:0005737 Component Cytoplasm IBA
GO:0005737 Component Cytoplasm IEA
GO:0005829 Component Cytosol IDA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300131 9091 ENSG00000102024
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P13797
Protein name Plastin-3 (T-fimbrin) (T-plastin)
Protein function Actin-bundling protein.
PDB 1AOA , 1WJO , 7R94 , 7SX8 , 7SX9 , 7SXA
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13499 EF-hand_7 14 82 EF-hand domain pair Domain
PF00307 CH 123 239 Calponin homology (CH) domain Domain
PF00307 CH 267 379 Calponin homology (CH) domain Domain
PF00307 CH 397 507 Calponin homology (CH) domain Domain
PF00307 CH 518 628 Calponin homology (CH) domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in a variety of organs, including muscle, brain, uterus and esophagus.
Sequence
Sequence length 630
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
21
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Bone mineral density quantitative trait locus 18 Likely pathogenic; Pathogenic rs781875935, rs781935919, rs2147533064, rs2521452967, rs1135402748, rs1603241972, rs2074664927 RCV003147730
RCV002250943
RCV002251141
RCV004594801
RCV000496987
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Congenital diaphragmatic hernia Likely pathogenic rs2147551760 RCV001827472
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hernia, anterior diaphragmatic Likely pathogenic rs2147551760, rs2521471111, rs2521547128 RCV003985024
RCV003405218
RCV003412537
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Nonpapillary renal cell carcinoma Pathogenic; Likely pathogenic rs2147590595, rs2147586886, rs2147533064 RCV005911325
RCV005917574
RCV005930076
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Adrenocortical carcinoma, hereditary Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BONE FRAGILITY WITH CONTRACTURES, ARTERIAL RUPTURE, AND DEAFNESS CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DESBUQUOIS SYNDROME CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute monocytic leukemia Monocytic Leukemia BEFREE 31717802
★☆☆☆☆
Found in Text Mining only
Bone Diseases Bone disease Pubtator 24616189 Associate
★☆☆☆☆
Found in Text Mining only
Bone Diseases Bone Disease BEFREE 27477003
★☆☆☆☆
Found in Text Mining only
Bone Diseases Metabolic Bone disease Pubtator 31968132 Associate
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 25454514, 25880010, 30829071, 31293151
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 25880010, 30829071 Associate
★☆☆☆☆
Found in Text Mining only
Carotid Stenosis Carotid artery stenosis Pubtator 35773742 Associate
★☆☆☆☆
Found in Text Mining only
Colon Carcinoma Colon Carcinoma BEFREE 23549633
★☆☆☆☆
Found in Text Mining only
Colorectal Carcinoma Colorectal Cancer BEFREE 23378342, 24170770, 24217791, 25902072
★☆☆☆☆
Found in Text Mining only
Colorectal Neoplasms Colorectal neoplasm Pubtator 23549633, 25902072 Associate
★☆☆☆☆
Found in Text Mining only