Gene Gene information from NCBI Gene database.
Entrez ID 5357
Gene name Plastin 1
Gene symbol PLS1
Synonyms (NCBI Gene)
DFNA76
Chromosome 3
Chromosome location 3q23
Summary Plastins are a family of actin-binding proteins that are conserved throughout eukaryote evolution and expressed in most tissues of higher eukaryotes. In humans, two ubiquitous plastin isoforms (L and T) have been identified. The protein encoded by this ge
SNPs SNP information provided by dbSNP.
4
SNP ID Visualize variation Clinical significance Consequence
rs1560070780 C>T Pathogenic, uncertain-significance Missense variant, coding sequence variant
rs1577876794 T>C Likely-pathogenic, pathogenic Missense variant, coding sequence variant
rs1577888561 T>G Uncertain-significance, pathogenic Missense variant, coding sequence variant
rs1577888985 G>A Uncertain-significance, pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
240
miRTarBase ID miRNA Experiments Reference
MIRT020466 hsa-miR-106b-5p Microarray 17242205
MIRT020716 hsa-miR-155-5p Reporter assay;Other 20584899
MIRT023752 hsa-miR-1-3p Proteomics;Microarray 18668037
MIRT029352 hsa-miR-26b-5p Microarray 19088304
MIRT050998 hsa-miR-17-5p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
33
GO ID Ontology Definition Evidence Reference
GO:0001951 Process Intestinal D-glucose absorption IEA
GO:0003779 Function Actin binding IEA
GO:0005200 Function Structural constituent of cytoskeleton TAS 8139549
GO:0005509 Function Calcium ion binding IEA
GO:0005737 Component Cytoplasm IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602734 9090 ENSG00000120756
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q14651
Protein name Plastin-1 (Intestine-specific plastin) (I-plastin)
Protein function Actin-bundling protein. In the inner ear, it is required for stereocilia formation. Mediates liquid packing of actin filaments that is necessary for stereocilia to grow to their proper dimensions.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13833 EF-hand_8 3 43 EF-hand domain pair Domain
PF00036 EF-hand_1 55 83 EF hand Domain
PF00307 CH 122 239 Calponin homology (CH) domain Domain
PF00307 CH 266 377 Calponin homology (CH) domain Domain
PF00307 CH 395 505 Calponin homology (CH) domain Domain
PF00307 CH 516 626 Calponin homology (CH) domain Domain
Tissue specificity TISSUE SPECIFICITY: In small intestine, colon, and kidney; relatively lower levels of expression are detected in the lung and stomach. {ECO:0000269|PubMed:8139549}.
Sequence
Sequence length 629
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
23
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Autosomal dominant nonsyndromic hearing impairment Likely pathogenic rs1560070780 RCV001261780
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Autosomal dominant nonsyndromic hearing loss Likely pathogenic rs1577876794 RCV000856828
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Bilateral sensorineural hearing impairment Likely pathogenic rs1577876794 RCV000856828
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Hearing impairment Likely pathogenic rs1560070780 RCV000754559
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL DOMINANT ISOLATED SENSORINEURAL DEAFNESS TYPE DFNA Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cholangiocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 19223491
★☆☆☆☆
Found in Text Mining only
Autosomal dominant non-syndromic sensorineural deafness type DFNA Non-Syndromic Sensorineural Deafness Orphanet
★☆☆☆☆
Found in Text Mining only
Hearing Loss Hearing loss Pubtator 30872814 Associate
★☆☆☆☆
Found in Text Mining only
Intellectual Disability Intellectual developmental disorder Pubtator 30872814 Associate
★☆☆☆☆
Found in Text Mining only
Liver neoplasms Liver neoplasms CTD_human_DG 17114358
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Lupus Erythematosus Systemic Systemic lupus erythematosus Pubtator 1522211 Associate
★☆☆☆☆
Found in Text Mining only
Malignant neoplasm of liver Liver Cancer CTD_human_DG 17114358
★☆☆☆☆
Found in Text Mining only
Motor Neuron Disease Motor Neuron Disease BEFREE 18332252
★☆☆☆☆
Found in Text Mining only
Neoplasms Neoplasms BEFREE 30105408
★☆☆☆☆
Found in Text Mining only
Nodular Sclerosis Classical Hodgkin Lymphoma Classical Hodgkin lymphoma BEFREE 31397523
★☆☆☆☆
Found in Text Mining only