Gene Gene information from NCBI Gene database.
Entrez ID 5313
Gene name Pyruvate kinase L/R
Gene symbol PKLR
Synonyms (NCBI Gene)
CNSHA2PK1PKLPKRLRPK
Chromosome 1
Chromosome location 1q22
Summary The protein encoded by this gene is a pyruvate kinase that catalyzes the transphosphorylation of phohsphoenolpyruvate into pyruvate and ATP, which is the rate-limiting step of glycolysis. Defects in this enzyme, due to gene mutations or genetic variations
SNPs SNP information provided by dbSNP.
24
SNP ID Visualize variation Clinical significance Consequence
rs8177988 C>T Conflicting-interpretations-of-pathogenicity, likely-pathogenic, uncertain-significance Genic downstream transcript variant, missense variant, coding sequence variant
rs74315362 G>A Pathogenic Missense variant, 3 prime UTR variant, coding sequence variant
rs113403872 C>T Pathogenic Missense variant, coding sequence variant, genic downstream transcript variant
rs116100695 G>A Likely-pathogenic, pathogenic, conflicting-interpretations-of-pathogenicity Genic downstream transcript variant, missense variant, coding sequence variant
rs118204083 G>A Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
54
miRTarBase ID miRNA Experiments Reference
MIRT1237584 hsa-miR-3688-3p CLIP-seq
MIRT1237585 hsa-miR-1270 CLIP-seq
MIRT1237586 hsa-miR-1273f CLIP-seq
MIRT1237587 hsa-miR-1296 CLIP-seq
MIRT1237588 hsa-miR-147 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
2
Transcription factor Regulation Reference
USF1 Unknown 7852331
USF2 Unknown 7852331
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
31
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0000287 Function Magnesium ion binding IEA
GO:0001666 Process Response to hypoxia IEA
GO:0003824 Function Catalytic activity IEA
GO:0004743 Function Pyruvate kinase activity IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
609712 9020 ENSG00000143627
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P30613
Protein name Pyruvate kinase PKLR (EC 2.7.1.40) (Pyruvate kinase 1) (Pyruvate kinase isozymes L/R) (R-type/L-type pyruvate kinase) (Red cell/liver pyruvate kinase)
Protein function Pyruvate kinase that catalyzes the conversion of phosphoenolpyruvate to pyruvate with the synthesis of ATP, and which plays a key role in glycolysis.
PDB 2VGB , 2VGF , 2VGG , 2VGI , 4IMA , 4IP7 , 5SC8 , 5SC9 , 5SCA , 5SCB , 5SCC , 5SCD , 5SCE , 5SCF , 5SCG , 5SCH , 5SCI , 5SCJ , 5SCK , 5SCL , 5SDT , 6NN4 , 6NN5 , 6NN7 , 6NN8 , 7FRV , 7FRW , 7FRX , 7FRY , 7FRZ , 7FS0 , 7FS1 , 7FS2 , 7FS3 , 7FS4 , 7FS5 , 7FS6 , 7FS7 , 7FS8 , 7FS9 , 7FSA , 7FSB , 7FSC , 7FSD , 7QDN , 7QZU , 8TBS , 8TBT , 8TBU , 8XFD
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00224 PK 85 438 Pyruvate kinase, barrel domain Family
PF02887 PK_C 453 571 Pyruvate kinase, alpha/beta domain Domain
Sequence
Sequence length 574
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Glycolysis / Gluconeogenesis
Pyruvate metabolism
Metabolic pathways
Carbon metabolism
Biosynthesis of amino acids
Insulin signaling pathway
Type II diabetes mellitus
Non-alcoholic fatty liver disease
Maturity onset diabetes of the young
  Glycolysis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
21
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Congenital anemia Pathogenic rs113403872, rs773626254 RCV005624664
RCV005626197
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
PKLR-related disorder Pathogenic; Likely pathogenic rs754939638, rs574051756, rs981579065, rs113403872, rs116100695, rs772473652, rs1167329263, rs1647346476, rs201255024 RCV003416372
RCV005250195
RCV003911130
RCV003421893
RCV004751189
View all (4 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Pyruvate kinase deficiency of red cells Pathogenic; Likely pathogenic rs754939638, rs1433205059, rs776594413, rs2148218886, rs74315362, rs118204084, rs118204085, rs113403872, rs116100695, rs118204089, rs2148221101, rs771145576, rs774652817, rs1193689718, rs772860949
View all (18 more)
RCV002295341
RCV001732191
RCV002250766
RCV001729977
RCV000001572
View all (30 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Pyruvate kinase hyperactivity Likely pathogenic; Pathogenic rs776594413, rs116100695, rs774652817, rs201953584, rs886045351 RCV002246424
RCV000762857
RCV005041964
RCV000762858
RCV002487303
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ANEMIA, CONGENITAL, NONSPHEROCYTIC HEMOLYTIC, 2 HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA, HEMOLYTIC Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ANEMIA, HEMOLYTIC, CONGENITAL NONSPHEROCYTIC Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
BREAST CANCER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Anemia Anemia Pubtator 11960989, 29396846, 9166866 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Anemia BEFREE 15870173, 24481986
★☆☆☆☆
Found in Text Mining only
Anemia Anemia LHGDN 18726918
★☆☆☆☆
Found in Text Mining only
Anemia Dyserythropoietic Congenital Congenital dyserythropoietic anemia Pubtator 29396846, 36305449 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Hemolytic Hemolytic anemia Pubtator 10354118, 11054094, 11328279, 15059150, 29288557, 33370479 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Hemolytic Autoimmune Autoimmune hemolytic anemia Pubtator 21794208 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Hemolytic Congenital Hemolytic anemia Pubtator 1536957, 29396846, 9160692 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Hemolytic Congenital Nonspherocytic Hemolytic anemia Pubtator 11960989, 15870173, 24375447, 7706479, 8483951, 9057665 Associate
★☆☆☆☆
Found in Text Mining only
Anemia Sickle Cell Sickle cell anemia Pubtator 35271708 Associate
★☆☆☆☆
Found in Text Mining only
Anemia, Hemolytic Anemia LHGDN 11916152, 11960989, 16540430
★★☆☆☆
Found in Text Mining + Unknown/Other Associations