Gene Gene information from NCBI Gene database.
Entrez ID 525
Gene name ATPase H+ transporting V1 subunit B1
Gene symbol ATP6V1B1
Synonyms (NCBI Gene)
ATP6B1DRTA2RTA1BVATBVMA2VPP3
Chromosome 2
Chromosome location 2p13.3
Summary This gene encodes a component of vacuolar ATPase (V-ATPase), a multisubunit enzyme that mediates acidification of eukaryotic intracellular organelles. V-ATPase dependent organelle acidification is necessary for such intracellular processes as protein sort
SNPs SNP information provided by dbSNP.
19
SNP ID Visualize variation Clinical significance Consequence
rs121964879 C>T Pathogenic Genic upstream transcript variant, stop gained, coding sequence variant
rs121964880 T>C Likely-pathogenic, pathogenic Coding sequence variant, missense variant
rs121964881 G>A Pathogenic Coding sequence variant, missense variant
rs145536062 C>T Pathogenic-likely-pathogenic, likely-pathogenic Coding sequence variant, stop gained
rs145735762 C>G,T Conflicting-interpretations-of-pathogenicity, uncertain-significance Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
38
miRTarBase ID miRNA Experiments Reference
MIRT568914 hsa-miR-1321 PAR-CLIP 20371350
MIRT568912 hsa-miR-4739 PAR-CLIP 20371350
MIRT568913 hsa-miR-4756-5p PAR-CLIP 20371350
MIRT568911 hsa-miR-1247-3p PAR-CLIP 20371350
MIRT568910 hsa-miR-4537 PAR-CLIP 20371350
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
56
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0000221 Component Vacuolar proton-transporting V-type ATPase, V1 domain IDA 33065002
GO:0000221 Component Vacuolar proton-transporting V-type ATPase, V1 domain IEA
GO:0001503 Process Ossification IMP 16433694
GO:0003091 Process Renal water homeostasis IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
192132 853 ENSG00000116039
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P15313
Protein name V-type proton ATPase subunit B, kidney isoform (V-ATPase subunit B 1) (Endomembrane proton pump 58 kDa subunit) (Vacuolar proton pump subunit B 1)
Protein function Non-catalytic subunit of the V1 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons (PubMed:16769747). V-ATPase
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02874 ATP-synt_ab_N 44 110 ATP synthase alpha/beta family, beta-barrel domain Domain
PF00006 ATP-synt_ab 167 393 ATP synthase alpha/beta family, nucleotide-binding domain Domain
Tissue specificity TISSUE SPECIFICITY: Kidney; localizes to early distal nephron, encompassing thick ascending limbs and distal convoluted tubules (at protein level) (PubMed:16769747, PubMed:29993276). Expressed in the cochlea and endolymphatic sac (PubMed:9916796). {ECO:00
Sequence
MAMEIDSRPGGLPGSSCNLGAAREHMQAVTRNYITHPRVTYRTVCSVNGPLVVLDRVKFA
QYAEIVHFTLPDGTQRSGQVLEVAGTKAIVQVFEGTSGIDARKTTCEFTG
DILRTPVSED
MLGRVFNGSGKPIDKGPVVMAEDFLDINGQPINPHSRIYPEEMIQTGISPIDVMNSIARG
QKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYHDDNFAIVFAAMGVNMETARFFKS
DFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEA
LREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRGGSITQIPILTMPNDDITHPIP
DLTGFITEGQIYVDRQLHNRQIYPPINVLPSLS
RLMKSAIGEGMTRKDHGDVSNQLYACY
AIGKDVQAMKAVVGEEALTSEDLLYLEFLQKFEKNFINQGPYENRSVFESLDLGWKLLRI
FPKEMLKRIPQAVIDEFYSREGALQDLAPDTAL
Sequence length 513
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Oxidative phosphorylation
Metabolic pathways
Phagosome
mTOR signaling pathway
Synaptic vesicle cycle
Collecting duct acid secretion
Vibrio cholerae infection
Epithelial cell signaling in Helicobacter pylori infection
Human papillomavirus infection
Rheumatoid arthritis
  ROS and RNS production in phagocytes
Insulin receptor recycling
Transferrin endocytosis and recycling
Amino acids regulate mTORC1
Ion channel transport
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
24
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of the genitourinary system Likely pathogenic rs2104827591 RCV001814505
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
ATP6V1B1-related disorder Likely pathogenic; Pathogenic rs1680488861, rs781969081, rs1572919267 RCV003408066
RCV003411471
RCV003413587
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Distal renal tubular acidosis Pathogenic; Likely pathogenic rs781838938, rs121964880, rs782152033 RCV001849357
RCV001849262
RCV001849427
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Gastric cancer Likely pathogenic; Pathogenic rs121964881 RCV005887475
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
AUTOSOMAL RECESSIVE DISTAL RENAL TUBULAR ACIDOSIS GWAS catalog, Orphanet
GWAS catalog, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
GOUT GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Autosomal recessive distal renal tubular acidosis Renal Tubular Acidosis Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Breast Neoplasms Breast neoplasm Pubtator 33000417 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Ovarian Epithelial Epithelial ovarian carcinoma Pubtator 36999629 Associate
★☆☆☆☆
Found in Text Mining only
Deafness Deafness Pubtator 12414817 Associate
★☆☆☆☆
Found in Text Mining only
Distal Renal Tubular Acidosis Distal Renal Tubular Acidosis BEFREE 11160790, 12384298, 12500243, 12579397, 17216496, 17669226, 18386070, 19639346, 20233014, 20805693, 23114896, 23729491, 23923981, 24252324, 25498251
View all (12 more)
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Distal Renal Tubular Acidosis Distal Renal Tubular Acidosis GENOMICS_ENGLAND_DG
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Dysmorphic features Dysmorphic Features CLINVAR_DG 11045400, 16611712, 16769747, 23729491, 23923981, 27247958, 28188436, 7499943, 9916796
★☆☆☆☆
Found in Text Mining only
Fanconi Syndrome Fanconi syndrome Pubtator 28188436 Associate
★☆☆☆☆
Found in Text Mining only
Growth Disorders Growth disorder Pubtator 30230413, 38445406 Associate
★☆☆☆☆
Found in Text Mining only
Hearing Loss Hearing loss Pubtator 12414817, 20622307 Associate
★☆☆☆☆
Found in Text Mining only