Gene Gene information from NCBI Gene database.
Entrez ID 5238
Gene name Phosphoglucomutase 3
Gene symbol PGM3
Synonyms (NCBI Gene)
AGM1IMD23PAGMPGM 3
Chromosome 6
Chromosome location 6q14.1
Summary This gene encodes a member of the phosphohexose mutase family. The encoded protein mediates both glycogen formation and utilization by catalyzing the interconversion of glucose-1-phosphate and glucose-6-phosphate. A non-synonymous single nucleotide polymo
SNPs SNP information provided by dbSNP.
12
SNP ID Visualize variation Clinical significance Consequence
rs267608259 TTC>- Pathogenic Coding sequence variant, inframe deletion, non coding transcript variant
rs267608260 A>G Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs587777414 AAGTT>- Pathogenic Non coding transcript variant, intron variant, frameshift variant, coding sequence variant
rs587777415 A>C Pathogenic Non coding transcript variant, missense variant, coding sequence variant
rs587777416 ACT>- Pathogenic Non coding transcript variant, inframe indel, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
485
miRTarBase ID miRNA Experiments Reference
MIRT023451 hsa-miR-30b-5p Sequencing 20371350
MIRT024516 hsa-miR-215-5p Microarray 19074876
MIRT026705 hsa-miR-192-5p Microarray 19074876
MIRT032419 hsa-let-7b-5p Proteomics 18668040
MIRT045722 hsa-miR-125a-5p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
22
GO ID Ontology Definition Evidence Reference
GO:0000287 Function Magnesium ion binding IEA
GO:0004610 Function Phosphoacetylglucosamine mutase activity IBA
GO:0004610 Function Phosphoacetylglucosamine mutase activity IDA 11004509
GO:0004610 Function Phosphoacetylglucosamine mutase activity IEA
GO:0004610 Function Phosphoacetylglucosamine mutase activity IMP 24589341
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
172100 8907 ENSG00000013375
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O95394
Protein name Phosphoacetylglucosamine mutase (PAGM) (EC 5.4.2.3) (Acetylglucosamine phosphomutase) (N-acetylglucosamine-phosphate mutase) (Phosphoglucomutase-3) (PGM 3)
Protein function Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, a sugar nucleotide critical to multiple glycosylation pathways including protein N- and O-glycosylation. {ECO:0000303|PubMed:24589341,
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02878 PGM_PMM_I 44 102 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Domain
PF02878 PGM_PMM_I 103 198 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Domain
PF00408 PGM_PMM_IV 431 528 Phosphoglucomutase/phosphomannomutase, C-terminal domain Family
Tissue specificity TISSUE SPECIFICITY: Found in many tissues except lung. Relatively high expression in pancreas, heart, liver, and placenta, and relatively low expression in brain, skeletal muscle and kidney. {ECO:0000269|PubMed:10721701}.
Sequence
MDLGAITKYSALHAKPNGLILQYGTAGFRTKAEHLDHVMFRMGLLAVLRSKQTKSTIGVM
VTASHNPEEDNGVKLVDPLGEMLAPSWEEHATCLANAEEQDM
QRVLIDISEKEAVNLQQD
AFVVIGRDTRPSSEKLSQSVIDGVTVLGGQFHDYGLLTTPQLHYMVYCRNTGGRYGKATI
EGYYQKLSKAFVELTKQA
SCSGDEYRSLKVDCANGIGALKLREMEHYFSQGLSVQLFNDG
SKGKLNHLCGADFVKSHQKPPQGMEIKSNERCCSFDGDADRIVYYYHDADGHFHLIDGDK
IATLISSFLKELLVEIGESLNIGVVQTAYANGSSTRYLEEVMKVPVYCTKTGVKHLHHKA
QEFDIGVYFEANGHGTALFSTAVEMKIKQSAEQLEDKKRKAAKMLENIIDLFNQAAGDAI
SDMLVIEAILALKGLTVQQWDALYTDLPNRQLKVQVADRRVISTTDAERQAVTPPGLQEA
INDLVKKYKLSRAFVRPSGTEDVVRVYAEADSQESADHLAHEVSLAVF
QLAGGIGERPQP
GF
Sequence length 542
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Amino sugar and nucleotide sugar metabolism
Metabolic pathways
Biosynthesis of nucleotide sugars
  Synthesis of UDP-N-acetyl-glucosamine
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
9
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Hyper-IgE syndrome Pathogenic; Likely pathogenic rs267608260, rs267608261, rs267608259 RCV000144537
RCV000144536
RCV000144535
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Immunodeficiency 23 Pathogenic; Likely pathogenic rs1293351659, rs2128497316, rs2128504331, rs565900346, rs777118863, rs587777413, rs587777414, rs587777415, rs587777416, rs267608260, rs267608261, rs1483237450, rs2128509412, rs2128506370, rs587777562
View all (38 more)
RCV001383959
RCV001386408
RCV001383524
RCV003746597
RCV001910246
View all (49 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
PGM3-related disorder Pathogenic rs759187140, rs1404084330 RCV004755013
RCV003900362
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Severe combined immunodeficiency disease Likely pathogenic; Pathogenic rs565900346, rs587777562, rs1786839596, rs2538234398, rs764377394, rs759187140, rs144104577 RCV001733378
RCV004700435
RCV002266321
RCV003155837
RCV003487265
View all (2 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Hepatocellular carcinoma Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
INSOMNIA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Malignant tumor of urinary bladder Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
SCHIZOPHRENIA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Allergic rhinitis (disorder) Allergic rhinitis HPO_DG
★☆☆☆☆
Found in Text Mining only
Anemia, Hemolytic Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Asthma Asthma HPO_DG
★☆☆☆☆
Found in Text Mining only
Autoimmune Diseases Autoimmune disease Pubtator 24589341 Associate
★☆☆☆☆
Found in Text Mining only
B-CELL MALIGNANCY, LOW-GRADE Lymphocytic Leukemia BEFREE 25956014
★☆☆☆☆
Found in Text Mining only
Bone Marrow Failure Disorders Bone marrow failure syndromes Pubtator 28543917 Associate
★☆☆☆☆
Found in Text Mining only
Brachydactyly Brachydactyly HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 29515119
★☆☆☆☆
Found in Text Mining only
Bronchiectasis Bronchiectasis HPO_DG
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate HPO_DG
★☆☆☆☆
Found in Text Mining only