Gene Gene information from NCBI Gene database.
Entrez ID 5213
Gene name Phosphofructokinase, muscle
Gene symbol PFKM
Synonyms (NCBI Gene)
ATP-PFKGSD7PFK-1PFK-APFK1PFKAPFKXPPP1R122
Chromosome 12
Chromosome location 12q13.11
Summary Three phosphofructokinase isozymes exist in humans: muscle, liver and platelet. These isozymes function as subunits of the mammalian tetramer phosphofructokinase, which catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-bisphosphate. Te
SNPs SNP information provided by dbSNP.
11
SNP ID Visualize variation Clinical significance Consequence
rs41291971 G>A Benign, likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, non coding transcript variant, coding sequence variant
rs121918193 G>A,C,T Pathogenic Non coding transcript variant, coding sequence variant, intron variant, missense variant
rs121918194 A>C Pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs121918196 G>T Pathogenic Non coding transcript variant, coding sequence variant, missense variant
rs746348793 G>A Likely-pathogenic Splice donor variant
miRNA miRNA information provided by mirtarbase database.
202
miRTarBase ID miRNA Experiments Reference
MIRT052269 hsa-let-7b-5p CLASH 23622248
MIRT049227 hsa-miR-92a-3p CLASH 23622248
MIRT044562 hsa-miR-320a CLASH 23622248
MIRT044562 hsa-miR-320a CLASH 23622248
MIRT655226 hsa-miR-1250-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
48
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0003824 Function Catalytic activity IEA
GO:0003872 Function 6-phosphofructokinase activity IBA
GO:0003872 Function 6-phosphofructokinase activity IDA 6444721, 8780720
GO:0003872 Function 6-phosphofructokinase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
610681 8877 ENSG00000152556
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P08237
Protein name ATP-dependent 6-phosphofructokinase, muscle type (ATP-PFK) (PFK-M) (EC 2.7.1.11) (6-phosphofructokinase type A) (Phosphofructo-1-kinase isozyme A) (PFK-A) (Phosphohexokinase)
Protein function Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
PDB 4OMT
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00365 PFK 17 324 Phosphofructokinase Domain
PF00365 PFK 402 687 Phosphofructokinase Domain
Sequence
Sequence length 780
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Glycolysis / Gluconeogenesis
Pentose phosphate pathway
Fructose and mannose metabolism
Galactose metabolism
Metabolic pathways
Carbon metabolism
Biosynthesis of amino acids
RNA degradation
HIF-1 signaling pathway
AMPK signaling pathway
Thyroid hormone signaling pathway
Glucagon signaling pathway
Central carbon metabolism in cancer
  Glycolysis
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
24
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Glycogen storage disease Pathogenic rs767095759 RCV000826149
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Glycogen storage disease, type VII Likely pathogenic; Pathogenic rs1305706304, rs2135976459, rs1410122696, rs2135856711, rs1202417178, rs866260025, rs2136049056, rs1233958453, rs1369841345, rs2136020407, rs2137862074, rs202143236, rs2135886253, rs2135995131, rs2136019667
View all (94 more)
RCV001378843
RCV001379631
RCV001377683
RCV001387775
RCV001387777
View all (110 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Peroxisomal biogenesis disorder 3b Pathogenic rs202143236 RCV000008219
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
PFKM-related disorder Likely pathogenic rs759413488 RCV003974449
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Cervical cancer Likely benign; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
DIABETES MELLITUS, EXPERIMENTAL CTD
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Gastric cancer Likely benign; Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
GLYCOGEN STORAGE DISEASE DUE TO MUSCLE PHOSPHOFRUCTOKINASE DEFICIENCY Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 27767175
★☆☆☆☆
Found in Text Mining only
Anemia Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Anemia, Hemolytic Anemia HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 20483646, 24493630
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 24493630, 35328104 Associate
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Carcinogenesis Pubtator 25048361, 29038421 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Carcinoma BEFREE 22213537
★☆☆☆☆
Found in Text Mining only
Carcinoma Hepatocellular Hepatocellular carcinoma Pubtator 40149892 Associate
★☆☆☆☆
Found in Text Mining only
Cholelithiasis Cholelithiasis HPO_DG
★☆☆☆☆
Found in Text Mining only
Colorectal Neoplasms Colorectal neoplasm Pubtator 34564972 Associate
★☆☆☆☆
Found in Text Mining only