Gene Gene information from NCBI Gene database.
Entrez ID 5193
Gene name Peroxisomal biogenesis factor 12
Gene symbol PEX12
Synonyms (NCBI Gene)
PAF-3PBD3A
Chromosome 17
Chromosome location 17q12
Summary This gene belongs to the peroxin-12 family. Peroxins (PEXs) are proteins that are essential for the assembly of functional peroxisomes. The peroxisome biogenesis disorders (PBDs) are a group of genetically heterogeneous autosomal recessive, lethal disease
SNPs SNP information provided by dbSNP.
50
SNP ID Visualize variation Clinical significance Consequence
rs28936697 G>A Pathogenic, uncertain-significance Missense variant, coding sequence variant
rs28936698 T>A Pathogenic Missense variant, coding sequence variant
rs61752097 TG>- Pathogenic Frameshift variant, coding sequence variant
rs61752100 CTTT>- Likely-pathogenic, pathogenic Frameshift variant, coding sequence variant
rs61752102 TGT>- Likely-pathogenic, pathogenic Inframe deletion, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
129
miRTarBase ID miRNA Experiments Reference
MIRT726974 hsa-miR-15a-5p HITS-CLIP 22473208
MIRT726975 hsa-miR-15b-5p HITS-CLIP 22473208
MIRT726973 hsa-miR-16-5p HITS-CLIP 22473208
MIRT726972 hsa-miR-195-5p HITS-CLIP 22473208
MIRT1225448 hsa-miR-1208 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
48
GO ID Ontology Definition Evidence Reference
GO:0000209 Process Protein polyubiquitination IDA 24662292
GO:0000209 Process Protein polyubiquitination IDA 24662292
GO:0000425 Process Pexophagy IDA 26344566, 27597759
GO:0004842 Function Ubiquitin-protein transferase activity IBA
GO:0005515 Function Protein binding IPI 10562279, 10704444, 10837480, 12096124, 32296183
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601758 8854 ENSG00000108733
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O00623
Protein name Peroxisome assembly protein 12 (Peroxin-12) (Peroxisome assembly factor 3) (PAF-3)
Protein function Component of a retrotranslocation channel required for peroxisome organization by mediating export of the PEX5 receptor from peroxisomes to the cytosol, thereby promoting PEX5 recycling (PubMed:24662292, PubMed:9354782, PubMed:9632816). The retr
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04757 Pex2_Pex12 26 267 Pex2 / Pex12 amino terminal region Family
Sequence
Sequence length 359
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Peroxisome   E3 ubiquitin ligases ubiquitinate target proteins
Peroxisomal protein import
Class I peroxisomal membrane protein import
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
15
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Acute myeloid leukemia Likely pathogenic; Pathogenic rs144259891 RCV005900642
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Peroxisomal biogenesis disorder 3b Pathogenic; Likely pathogenic rs61752103, rs28936697, rs61752097, rs28936698 RCV000032926
RCV000008217
RCV000008218
RCV000008220
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Peroxisome biogenesis disorder Likely pathogenic; Pathogenic rs867245161, rs61752109, rs61752103, rs28936697, rs61752107, rs144259891, rs61752102, rs61752100, rs764657253, rs61752108, rs61752106, rs1567730901, rs398123301 RCV004017827
RCV005636691
RCV001193474
RCV002281700
RCV000781710
View all (8 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Peroxisome biogenesis disorder 3A (Zellweger) Pathogenic; Likely pathogenic rs2142228734, rs2072781707, rs2142228928, rs867245161, rs2142228982, rs1056238409, rs61752099, rs2142231201, rs2142231221, rs61752101, rs144259891, rs2072782816, rs2142231111, rs1429126106, rs923109489
View all (80 more)
RCV001377791
RCV001381260
RCV001380807
RCV001381697
RCV001383266
View all (92 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Familial cancer of breast Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
PEROXISOME BIOGENESIS DISORDER 1A Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Peroxisome biogenesis disorder 1A (Zellweger) Uncertain significance; Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
PEROXISOME BIOGENESIS DISORDER 3A CTD, ClinVar, GenCC, HPO
CTD, ClinVar, GenCC, HPO
CTD, ClinVar, GenCC, HPO
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Addison Disease Addison`s Disease HPO_DG
★☆☆☆☆
Found in Text Mining only
Adrenoleukodystrophy, Neonatal Adrenoleukodystrophy ORPHANET_DG
★☆☆☆☆
Found in Text Mining only
Blepharoptosis Ptosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Byzanthine arch palate High palate HPO_DG
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy HPO_DG
★☆☆☆☆
Found in Text Mining only
Cataract Cataract HPO_DG
★☆☆☆☆
Found in Text Mining only
Congenital Epicanthus Congenital Epicanthus HPO_DG
★☆☆☆☆
Found in Text Mining only
Cryptorchidism Cryptorchidism HPO_DG
★☆☆☆☆
Found in Text Mining only
Developmental regression Developmental regression HPO_DG
★☆☆☆☆
Found in Text Mining only
Dwarfism Dwarfism HPO_DG
★☆☆☆☆
Found in Text Mining only