Gene Gene information from NCBI Gene database.
Entrez ID 5189
Gene name Peroxisomal biogenesis factor 1
Gene symbol PEX1
Synonyms (NCBI Gene)
HMLR1PBD1APBD1BZWSZWS1
Chromosome 7
Chromosome location 7q21.2
Summary This gene encodes a member of the AAA ATPase family, a large group of ATPases associated with diverse cellular activities. This protein is cytoplasmic but is often anchored to a peroxisomal membrane where it forms a heteromeric complex and plays a role in
SNPs SNP information provided by dbSNP.
102
SNP ID Visualize variation Clinical significance Consequence
rs61750406 T>-,TT Pathogenic, likely-pathogenic Frameshift variant, non coding transcript variant, coding sequence variant, 5 prime UTR variant
rs61750409 G>A Likely-pathogenic Non coding transcript variant, stop gained, coding sequence variant
rs61750412 TG>- Likely-pathogenic Frameshift variant, non coding transcript variant, intron variant, coding sequence variant
rs61750414 AG>- Likely-pathogenic Frameshift variant, non coding transcript variant, coding sequence variant
rs61750415 ->A Pathogenic Frameshift variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
7
miRTarBase ID miRNA Experiments Reference
MIRT046918 hsa-miR-221-3p CLASH 23622248
MIRT1225487 hsa-miR-3653 CLIP-seq
MIRT1225488 hsa-miR-3658 CLIP-seq
MIRT1225489 hsa-miR-376a CLIP-seq
MIRT1225490 hsa-miR-376b CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
41
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0005515 Function Protein binding IPI 9588209, 16257970, 16854980, 32814053
GO:0005524 Function ATP binding IEA
GO:0005524 Function ATP binding IMP 16854980
GO:0005737 Component Cytoplasm IDA 9588209
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602136 8850 ENSG00000127980
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O43933
Protein name Peroxisomal ATPase PEX1 (EC 3.6.4.-) (Peroxin-1) (Peroxisome biogenesis disorder protein 1) (Peroxisome biogenesis factor 1)
Protein function Component of the PEX1-PEX6 AAA ATPase complex, a protein dislocase complex that mediates the ATP-dependent extraction of the PEX5 receptor from peroxisomal membranes, an essential step for PEX5 recycling (PubMed:11439091, PubMed:16314507, PubMed
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF09263 PEX-2N 17 98 Peroxisome biogenesis factor 1, N-terminal Domain
PF09262 PEX-1N 104 179 Peroxisome biogenesis factor 1, N-terminal Domain
PF00004 AAA 595 733 ATPase family associated with various cellular activities (AAA) Domain
PF00004 AAA 877 1007 ATPase family associated with various cellular activities (AAA) Domain
PF17862 AAA_lid_3 1029 1077 AAA+ lid domain Domain
Sequence
MWGSDRLAGAGGGGAAVTVAFTNARDCFLHLPRRLVAQLHLLQNQAIEVVWSHQPAFLSW
VEGRHFSDQGENVAEINRQVGQKLGLSNGGQVFLKPCS
HVVSCQQVEVEPLSADDWEILE
LHAVSLEQHLLDQIRIVFPKAIFPVWVDQQTYIFIQIVALIPAASYGRLETDTKLLIQP
K
TRRAKENTFSKADAEYKKLHSYGRDQKGMMKELQTKQLQSNTVGITESNENESEIPVDSS
SVASLWTMIGSIFSFQSEKKQETSWGLTEINAFKNMQSKVVPLDNIFRVCKSQPPSIYNA
SATSVFHKHCAIHVFPWDQEYFDVEPSFTVTYGKLVKLLSPKQQQSKTKQNVLSPEKEKQ
MSEPLDQKKIRSDHNEEDEKACVLQVVWNGLEELNNAIKYTKNVEVLHLGKVWIPDDLRK
RLNIEMHAVVRITPVEVTPKIPRSLKLQPRENLPKDISEEDIKTVFYSWLQQSTTTMLPL
VISEEEFIKLETKDGLKEFSLSIVHSWEKEKDKNIFLLSPNLLQKTTIQVLLDPMVKEEN
SEEIDFILPFLKLSSLGGVNSLGVSSLEHITHSLLGRPLSRQLMSLVAGLRNGALLLTGG
KGSGKSTLAKAICKEAFDKLDAHVERVDCKALRGKRLENIQKTLEVAFSEAVWMQPSVVL
LDDLDLIAGLPAVPEHEHSPDAVQSQRLAHALNDMIKEFISMGSLVALIATSQSQQSLHP
LLVSAQGVHIFQC
VQHIQPPNQEQRCEILCNVIKNKLDCDINKFTDLDLQHVAKETGGFV
ARDFTVLVDRAIHSRLSRQSISTREKLVLTTLDFQKALRGFLPASLRSVNLHKPRDLGWD
KIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVIARESRM
NFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRRGHDNTGVTDRV
VNQLLTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPP
PDQVSRLEILNVL
SDSLPLADDVDLQHVASVTDSFTGADLKALLYNAQLEALHGMLLSSGLQDGSSSSDSDLS
LSSMVFLNHSSGSDDSAGDGECGLDQSLVSLEMSEILPDESKFNMYRLYFGSSYESELGN
GTSSDLSSQCLSAPSSMTQDLPGVPGKDQLFSQPPVLRTASQEGCQELTQEQRDQLRADI
SIIKGRYRSQSGEDESMNQPGPIKTRLAISQSHLMTALGHTRPSISEDDWKNFAELYESF
QNPKRRKNQSGTMFRPGQKVTLA
Sequence length 1283
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Peroxisome   Peroxisomal protein import
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
45
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Abnormality of metabolism/homeostasis Pathogenic rs61750422 RCV001814132
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Heimler syndrome 1 Likely pathogenic; Pathogenic rs267608181, rs1459743428, rs1791439311, rs2116132444, rs1306607552, rs2116181485, rs1403870448, rs1164941642, rs866144313, rs1792878019, rs1275822594, rs1793398751, rs1791174009, rs1463323645, rs1467651370
View all (154 more)
RCV003473904
RCV003473940
RCV003473928
RCV003473983
RCV003474010
View all (168 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Leber congenital amaurosis Pathogenic rs61750420 RCV000022416
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Optic atrophy Pathogenic rs61750415 RCV004814857
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute myeloid leukemia Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Adrenocortical carcinoma, hereditary Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Chronic lymphocytic leukemia/small lymphocytic lymphoma Benign; Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations