Gene Gene information from NCBI Gene database.
Entrez ID 51763
Gene name Inositol polyphosphate-5-phosphatase K
Gene symbol INPP5K
Synonyms (NCBI Gene)
MDCCAIDPPSSKIP
Chromosome 17
Chromosome location 17p13.3
Summary This gene encodes a protein with 5-phosphatase activity toward polyphosphate inositol. The protein localizes to the cytosol in regions lacking actin stress fibers. It is thought that this protein may negatively regulate the actin cytoskeleton. Alternative
SNPs SNP information provided by dbSNP.
7
SNP ID Visualize variation Clinical significance Consequence
rs749383757 C>T Pathogenic Coding sequence variant, missense variant, initiator codon variant
rs750781027 C>A,T Pathogenic Coding sequence variant, missense variant, 5 prime UTR variant
rs761612652 C>T Pathogenic Coding sequence variant, missense variant
rs766046008 T>C Pathogenic Coding sequence variant, missense variant
rs1060505038 A>G Pathogenic Coding sequence variant, missense variant, 5 prime UTR variant
miRNA miRNA information provided by mirtarbase database.
15
miRTarBase ID miRNA Experiments Reference
MIRT029506 hsa-miR-26b-5p Microarray 19088304
MIRT1067460 hsa-miR-299-3p CLIP-seq
MIRT1067461 hsa-miR-3138 CLIP-seq
MIRT1067462 hsa-miR-3614-5p CLIP-seq
MIRT1067463 hsa-miR-4491 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
97
GO ID Ontology Definition Evidence Reference
GO:0001701 Process In utero embryonic development IEA
GO:0001726 Component Ruffle IBA
GO:0001726 Component Ruffle IDA 12536145
GO:0004439 Function Phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IBA
GO:0004439 Function Phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607875 33882 ENSG00000132376
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9BT40
Protein name Inositol polyphosphate 5-phosphatase K (EC 3.1.3.56) (Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase) (EC 3.1.3.86) (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase) (EC 3.1.3.36) (Skeletal muscle and kidney-enriched inositol phosphatase)
Protein function Inositol 5-phosphatase which acts on inositol 1,4,5-trisphosphate, inositol 1,3,4,5-tetrakisphosphate, phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate (PubMed:10753883, PubMed:16824732). Has 6-fold higher affin
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03372 Exo_endo_phos 19 311 Endonuclease/Exonuclease/phosphatase family Domain
PF17751 SKICH 331 431 SKICH domain Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed with highest levels in skeletal muscle, heart and kidney. {ECO:0000269|PubMed:10753883}.
Sequence
Sequence length 448
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Inositol phosphate metabolism
Metabolic pathways
  Synthesis of PIPs at the plasma membrane
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
14
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Congenital muscular dystrophy with cataracts and intellectual disability Likely pathogenic; Pathogenic rs2075207934, rs779061835, rs2075357811, rs2543926238, rs766046008, rs1060505039, rs750781027, rs761612652, rs1060505040, rs749383757 RCV002287624
RCV002287625
RCV002291261
RCV002291262
RCV000477672
View all (5 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Congenital muscular dystrophy Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
CONGENITAL MUSCULAR DYSTROPHY-CATARACT-INTELLECTUAL DISABILITY SYNDROME Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Congenital myopathy Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Distal myopathy Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Acute Cerebrovascular Accidents Stroke BEFREE 30924762
★☆☆☆☆
Found in Text Mining only
AICARDI-GOUTIERES SYNDROME Aicardi Goutieres Syndrome BEFREE 18636107
★☆☆☆☆
Found in Text Mining only
Anxiety Anxiety Disorder BEFREE 29434563
★☆☆☆☆
Found in Text Mining only
Anxiety Disorders Anxiety Disorder BEFREE 29434563
★☆☆☆☆
Found in Text Mining only
Arteriosclerosis Arteriosclerosis BEFREE 30601470
★☆☆☆☆
Found in Text Mining only
Atherosclerosis Atherosclerosis BEFREE 30601470
★☆☆☆☆
Found in Text Mining only
Avascular necrosis of the capital femoral epiphysis Avascular Necrosis Of The Capital Femoral Epiphysis HPO_DG
★☆☆☆☆
Found in Text Mining only
Bladder Neoplasm Bladder Neoplasm BEFREE 24817966
★☆☆☆☆
Found in Text Mining only
Brachydactyly Brachydactyly HPO_DG
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma BEFREE 24150787
★☆☆☆☆
Found in Text Mining only