Gene Gene information from NCBI Gene database.
Entrez ID 51684
Gene name SUFU negative regulator of hedgehog signaling
Gene symbol SUFU
Synonyms (NCBI Gene)
BCNS2JBTS32PRO1280SUFUHSUFUXL
Chromosome 10
Chromosome location 10q24.32
Summary The Hedgehog signaling pathway plays an important role in early human development. The pathway is a signaling cascade that plays a role in pattern formation and cellular proliferation during development. This gene encodes a negative regulator of the hedge
SNPs SNP information provided by dbSNP.
24
SNP ID Visualize variation Clinical significance Consequence
rs144158469 C>G,T Conflicting-interpretations-of-pathogenicity, likely-benign Synonymous variant, coding sequence variant
rs149513330 C>G,T Uncertain-significance, conflicting-interpretations-of-pathogenicity, likely-benign Coding sequence variant, missense variant, synonymous variant
rs202247756 C>T Risk-factor Coding sequence variant, missense variant
rs587776578 G>A,C Pathogenic Splice donor variant
rs1060501105 A>T Likely-pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
310
miRTarBase ID miRNA Experiments Reference
MIRT002084 hsa-miR-378a-5p Luciferase reporter assayWestern blotqRT-PCR 18077375
MIRT002084 hsa-miR-378a-5p Luciferase reporter assayWestern blotqRT-PCR 18077375
MIRT000670 hsa-miR-378a-3p Review 19935707
MIRT000670 hsa-miR-378a-3p Reporter assay 18077375
MIRT038747 hsa-miR-93-3p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
52
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 10564661
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II TAS 11001584
GO:0001843 Process Neural tube closure IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607035 16466 ENSG00000107882
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9UMX1
Protein name Suppressor of fused homolog (SUFUH)
Protein function Negative regulator in the hedgehog/smoothened signaling pathway (PubMed:10559945, PubMed:10564661, PubMed:10806483, PubMed:12068298, PubMed:12975309, PubMed:15367681, PubMed:22365972, PubMed:24217340, PubMed:24311597, PubMed:27234298, PubMed:289
PDB 1M1L , 4BL8 , 4BL9 , 4BLA , 4BLB , 4BLD , 4KM8 , 4KM9 , 4KMD , 4KMH
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05076 SUFU 64 241 Suppressor of fused protein (SUFU) Family
PF12470 SUFU_C 253 473 Suppressor of Fused Gli/Ci N terminal binding domain Family
Tissue specificity TISSUE SPECIFICITY: Ubiquitous in adult tissues. Detected in osteoblasts of the perichondrium in the developing limb of 12-week old embryos. Isoform 1 is detected in fetal brain, lung, kidney and testis. Isoform 2 is detected in fetal testis, and at much
Sequence
Sequence length 484
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Hedgehog signaling pathway
Pathways in cancer
Basal cell carcinoma
  Degradation of GLI1 by the proteasome
GLI3 is processed to GLI3R by the proteasome
Hedgehog 'off' state
Hedgehog 'on' state
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
45
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Basal cell nevus syndrome 2 Pathogenic; Likely pathogenic rs587776578, rs587776579, rs2545100510, rs1060501105 RCV003223388
RCV003227597
RCV003226893
RCV003448312
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Congenital fibrosarcoma Pathogenic rs1477199832 RCV003110131
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Familial meningioma Likely pathogenic rs2135959437, rs2492780262 RCV001542763
RCV004573687
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Gorlin syndrome Likely pathogenic; Pathogenic rs2063794106, rs2135870923, rs2135597189, rs2135743382, rs907135467, rs2135882232, rs2135888594, rs2135889203, rs2135954200, rs2135621012, rs2135742927, rs2135598685, rs2135597925, rs2135930329, rs2135597558
View all (52 more)
RCV001346789
RCV001377148
RCV001385355
RCV001384999
RCV001380113
View all (66 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
APRAXIA GenCC
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
APRAXIA, OCULOMOTOR, COGAN TYPE Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
APRAXIAS Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ATRIAL FIBRILLATION GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Accessory rib Accessory Rib HPO_DG
★☆☆☆☆
Found in Text Mining only
Acquired Kyphoscoliosis Acquired Kyphoscoliosis HPO_DG
★☆☆☆☆
Found in Text Mining only
Acrocallosal Syndrome Acrocallosal Syndrome ORPHANET_DG 28965847
★☆☆☆☆
Found in Text Mining only
Acrocallosal syndrome Acrocallosal Syndrome Orphanet
★☆☆☆☆
Found in Text Mining only
Acrocallosal syndrome, Schinzel type Acrocallosal Syndrome ORPHANET_DG 28965847
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma BEFREE 15077159, 19533801, 19833601, 21188540, 22508808, 22829011, 25287320, 25403219, 28620006, 29186568, 30554998, 30695694
★☆☆☆☆
Found in Text Mining only
Adult Medulloblastoma Medulloblastoma CTD_human_DG
★☆☆☆☆
Found in Text Mining only
Agenesis of corpus callosum Agenesis Of Corpus Callosum HPO_DG
★☆☆☆☆
Found in Text Mining only
Ambiguous Genitalia Ambiguous Genitalia HPO_DG
★☆☆☆☆
Found in Text Mining only
Ameloblastoma Ameloblastoma BEFREE 24930892
★☆☆☆☆
Found in Text Mining only