Gene Gene information from NCBI Gene database.
Entrez ID 5164
Gene name Pyruvate dehydrogenase kinase 2
Gene symbol PDK2
Synonyms (NCBI Gene)
PDHK2PDKII
Chromosome 17
Chromosome location 17q21.33
Summary This gene encodes a member of the pyruvate dehydrogenase kinase family. The encoded protein phosphorylates pyruvate dehydrogenase, down-regulating the activity of the mitochondrial pyruvate dehydrogenase complex. Overexpression of this gene may play a rol
miRNA miRNA information provided by mirtarbase database.
305
miRTarBase ID miRNA Experiments Reference
MIRT050290 hsa-miR-25-3p CLASH 23622248
MIRT1221741 hsa-miR-4637 CLIP-seq
MIRT1221742 hsa-miR-4672 CLIP-seq
MIRT1221743 hsa-miR-4789-5p CLIP-seq
MIRT1221744 hsa-miR-493 CLIP-seq
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
PPARG Repression 15955060
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
46
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0004672 Function Protein kinase activity IEA
GO:0004672 Function Protein kinase activity TAS 7499431, 10748134
GO:0004740 Function Pyruvate dehydrogenase (acetyl-transferring) kinase activity IBA
GO:0004740 Function Pyruvate dehydrogenase (acetyl-transferring) kinase activity IDA 19833728
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
602525 8810 ENSG00000005882
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q15119
Protein name [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial (EC 2.7.11.2) (Pyruvate dehydrogenase kinase isoform 2) (PDH kinase 2) (PDKII)
Protein function Kinase that plays a key role in the regulation of glucose and fatty acid metabolism and homeostasis via phosphorylation of the pyruvate dehydrogenase subunits PDHA1 and PDHA2. This inhibits pyruvate dehydrogenase activity, and thereby regulates
PDB 2BTZ , 2BU2 , 2BU5 , 2BU6 , 2BU7 , 2BU8 , 4MP2 , 4MP7 , 4MPC , 4MPE , 4MPN , 4V25 , 4V26 , 5J6A , 5J71 , 5M4K , 5M4M , 5M4N , 5M4P , 6LIL , 6LIN , 6LIO , 6TMP , 6TMQ , 6TMZ , 6TN0 , 6TN2 , 7EA0 , 7EAS , 7EBH , 7VBU , 7VBV , 7VBX , 8ZM1 , 8ZM2
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF10436 BCDHK_Adom3 30 192 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase Family
PF02518 HATPase_c 240 364 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in many tissues, with the highest level in heart and skeletal muscle, intermediate levels in brain, kidney, pancreas and liver, and low levels in placenta and lung. {ECO:0000269|PubMed:7499431}.
Sequence
Sequence length 407
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Diabetic cardiomyopathy   Regulation of pyruvate dehydrogenase (PDH) complex
Signaling by Retinoic Acid
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
2
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
CARDIOMYOPATHIES CTD, Disgenet
CTD, Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
PRIMARY CARDIOMYOPATHY Disgenet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Adenocarcinoma Adenocarcinoma BEFREE 27767175
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of lung (disorder) Lung adenocarcinoma BEFREE 30457021
★☆☆☆☆
Found in Text Mining only
Breast Neoplasms Breast neoplasm Pubtator 22562547 Associate
★☆☆☆☆
Found in Text Mining only
Carcinogenesis Carcinogenesis Pubtator 35212603 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Hepatocellular Hepatocellular carcinoma Pubtator 32022476, 35212603 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma of lung Lung carcinoma BEFREE 30457021
★☆☆☆☆
Found in Text Mining only
Carcinoma Renal Cell Renal cell carcinoma Pubtator 33564363, 37147361 Associate
★☆☆☆☆
Found in Text Mining only
Carcinoma Squamous Cell Squamous cell carcinoma Pubtator 27767175 Associate
★☆☆☆☆
Found in Text Mining only
Cardiomyopathies Cardiomyopathy CTD_human_DG 21037199
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cardiomyopathies, Primary Cardiomyopathy CTD_human_DG 21037199
★☆☆☆☆
Found in Text Mining only